Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01509 ATGGACGGTCGCGCTCTAACGGCCTCCTCCTTCTTCTCACCTATTGATTTATTGCGACCCAGAAGAGTTGCTGTTAGAAATCCGTGCTTTAATGCCAGACCCAGTAAGTTTTCGGTTCTTGCTTCCAAAGAAGAGGCTGAGCTCGACAAATGGGACCAAATGGAGCTCAAGTTTGGCCGCATGATTGGCGAAGACCCCAAATTAACACTGGCCAAGATAATGAGCAAAAAAATGAACACTGGCGCTTCTTATCTTGAAGTTGAGAAATCATTTTACCAGAAGAAGGGTAAGCTCAACGAGGTAGAGGAACTTTCTCTTGATGGTTTGAATTTGGTCAGACCTCAGTTAAAGAAGGAAATGAAGTTAGAAGCTGCCAATAAGCCATCAGCACCAGATTTAAAGAAACCAAGCCAAGCAGTTGCAAAGCCAGCAGTTAGTCCTAAAGGCAGGGTTCCCAATGTTATTTTGAGGAAACCAACAATTTATAAGGAGGATGATGTTGAAGATAAACCGTCGAGAATAAGAATGAAGCCAAATTTATCATTGAAAATGAGCAATGTATCAACAAAGGAGAAATATAGCGATATGACGCTGTTGAGGAAGCCAGAACCAATGGTTTCGAATGAAGTTATTGATGAGAAGGAAAAGCTATCTGGTGAAGAGAATGTTGTAAATCAGGCGAGTAAGGGATCAACAAGTGACCGAATTGATGGGTTTACTCTTTTTAAGAAGCCAGAAATAGGTGAAAACACAAGACTTGAAAATGAACAGGATCATAAAAATCTTGATCATTCAGAAAGTAGTACAGTTGATGATAAAAACGAAAATGTGTCTGCCATTTCTGAAGAAACTGAAGACGCCTCATCATCAAAGGAAAATGGGATAGATAATAATTATTTTGCTGTAGGATTACGGCCACCTGAGCCAAGTGATATGGGATATATTGAGGACACACCAGATTTGAGCAAATCATTTAGTGATCTTATGGATTCGACAATAAAATTGTCCAACGAAGCTACGTTATTGGGTAAACCAAAAAGGGTAGATTATTCTTCAAATGAAACATTAAAACTCGGTGGAGAAGAGACCTCGACTCCTGATGTTATTGGTGCTGGTGAGACAGAGAACTTCTCTGCTCTTCCTGCTTTGGAGGAACATGAACTTGCTGACTGGACTAAAGCAGAAGATCTGGCGAAGTCTGGAGACAGAGCTGATGTGGAAATAATAAGCTCGACTACCCGAGGTTTTGTTGTATCATTCGGCTCCATCGTAGGATTTATTCCATATCGTAATCTTTCTGCCAAGTGGAAGTTCTTAGCTTTCGAGTCTTGGCTAAGACAGAAAGGTTTGGATCCATCACTATACAAGCAAAACTTAGGAATTATTGGAATTAGTGACGGTGGAAGCCCGAATTTTGCTAGTACTAGGCCAGATCCAGAAATTGATGTAAAAAATGGGAGTGAGCTTACACCTGACATGAAATTGGAGGATCTTCTTCAAATTTATGATCGAGAGAAACTCAAATTCTTGTCATCATTTGTCGGCCAGAAAATCAAAGTAAATGTGGTGTTGGCTAACAGAAAATCAAGGAAGCTTATATTTTCCATAAGGCAAAAAGAAAGGGAAGAATTGGTCGAGAAAAAGAGGAGTTTAATGGCTACTCTGCAAGTAGGAGATGTTGTCAAATGTTGCATCACGAAGATCGCTTATTTTGGTATCTTTGTCGAGATCCAAGGAGTGCCCGCTTTGATTCATCAGACTGAGGTTTCTTGGGATGCTACTTTGAACCCTGCATCATACTTCAAGATTGGTCAGGTTGTCGAGGCAAAAGTTCATCAGTTGGATTTTTCACTCGAACGCATATTCTTATCGTTGAAGCAGATTACACCAGATCCGCTCGCTGAAGCATTGGAGTCTGTGGTTGGTGATCACGATCCCATGGATGGAAGATTAGAATCAGCCGAAGTGGACACCGAGTGGCCTGACGTAGAATCTCTCATCAACGAACTGCAAAATACTGAAGGTATTGAGGCTGTATCCAAAGGGCGATTTTTCCTTAGCCCTGGCTTGGCTCCAACCTTTCAGGTTTATATGGCTTCTATGTACGAAAATCAGTACAAATTACTTGCTCGATCTGGAAACAAAATACAGGAGCTGATGGTTCAGACATCATTGGATAAAGAAACCGTGAAATCTGTCATCTTAACTTGCACCAACAGGGTACAGTAG 2229 41.0 MDGRALTASSFFSPIDLLRPRRVAVRNPCFNARPSKFSVLASKEEAELDKWDQMELKFGRMIGEDPKLTLAKIMSKKMNTGASYLEVEKSFYQKKGKLNEVEELSLDGLNLVRPQLKKEMKLEAANKPSAPDLKKPSQAVAKPAVSPKGRVPNVILRKPTIYKEDDVEDKPSRIRMKPNLSLKMSNVSTKEKYSDMTLLRKPEPMVSNEVIDEKEKLSGEENVVNQASKGSTSDRIDGFTLFKKPEIGENTRLENEQDHKNLDHSESSTVDDKNENVSAISEETEDASSSKENGIDNNYFAVGLRPPEPSDMGYIEDTPDLSKSFSDLMDSTIKLSNEATLLGKPKRVDYSSNETLKLGGEETSTPDVIGAGETENFSALPALEEHELADWTKAEDLAKSGDRADVEIISSTTRGFVVSFGSIVGFIPYRNLSAKWKFLAFESWLRQKGLDPSLYKQNLGIIGISDGGSPNFASTRPDPEIDVKNGSELTPDMKLEDLLQIYDREKLKFLSSFVGQKIKVNVVLANRKSRKLIFSIRQKEREELVEKKRSLMATLQVGDVVKCCITKIAYFGIFVEIQGVPALIHQTEVSWDATLNPASYFKIGQVVEAKVHQLDFSLERIFLSLKQITPDPLAEALESVVGDHDPMDGRLESAEVDTEWPDVESLINELQNTEGIEAVSKGRFFLSPGLAPTFQVYMASMYENQYKLLARSGNKIQELMVQTSLDKETVKSVILTCTNRVQ 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8806016 8812804 - CmoCh02G015090.1 Cmo02g01509 377106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01509 742 MobiDBLite consensus disorder prediction 124 146 - -
Cmo02g01509 742 Pfam S1 RNA binding domain 555 626 IPR003029 GO:0003676
Cmo02g01509 742 Gene3D - 540 629 IPR012340 -
Cmo02g01509 742 MobiDBLite consensus disorder prediction 217 299 - -
Cmo02g01509 742 SMART S1_6 556 626 IPR022967 -
Cmo02g01509 742 SMART S1_6 399 537 IPR022967 -
Cmo02g01509 742 MobiDBLite consensus disorder prediction 221 235 - -
Cmo02g01509 742 ProSiteProfiles S1 domain profile. 558 626 IPR003029 GO:0003676
Cmo02g01509 742 MobiDBLite consensus disorder prediction 239 290 - -
Cmo02g01509 742 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 21 742 - -
Cmo02g01509 742 SUPERFAMILY Nucleic acid-binding proteins 386 547 IPR012340 -
Cmo02g01509 742 SUPERFAMILY Nucleic acid-binding proteins 544 649 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01509 - - - csv:101217667 1186.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01509 Cmo-Chr2:8806016 Cmo14g01501 Cmo-Chr14:12041306 1.05E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g361 . . . . . . . . . . . . Car02g01235 . . . Cpe05g00315 . . . . . . . . . . . . . . . Cone12ag0318 . . . Csa05g00302 Chy09g01202 . . . . . . . . . . Cmo02g01509 . . . . . . . Bhi12g00221 . . Lac11g2118 Hepe06g1567 . Lcy12g1675 . . . . . . . Lsi09g00285 . . Cme09g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010174 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01509 Cmo_Chr02 FPKM 24.480137 29.771954 43.547871 44.283871 131.724792 137.936096 140.378387 47.648087 49.863972 47.38113