Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01512 ATGCCCGCCGGAACTCTTGAAGTTCTTCTTATTTCCGCCAAGGGGCTTGAGAACACCGATTTCCTCTGTGACATGGATCCTTATGTTGTTCTTACTTGCCGCTCACAGGAGCAGAAAAGCAGTGTTGCGTCAGGAAAGGGGTCGGAGCCTGAATGGAATGAGACTTTTGTATTCACCATATCTGATGGCGCTGAAGAGATCACCCTAAAGATACTGGACAGTGATAGTGGCACGCAAGATGACTTTGTGGGCGAAGTAACCATTCCTCTGGAACCTGTTTACCTTGAAAAAACCCTCCCTGCAACACCATATAACGTTGTCAAGGATGCAGAATACCGCGGAGAGATCCGAGTTGGCCTTACTTTCGCTCCTGAGGAGAGAACTGCAACAGATTTTCAAGGGGAAGACGAAGCTTATGGTGGATGGAAGCAATCCGCAGATGGAGAATGA 450 48.22 MPAGTLEVLLISAKGLENTDFLCDMDPYVVLTCRSQEQKSSVASGKGSEPEWNETFVFTISDGAEEITLKILDSDSGTQDDFVGEVTIPLEPVYLEKTLPATPYNVVKDAEYRGEIRVGLTFAPEERTATDFQGEDEAYGGWKQSADGE 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8825626 8827818 - CmoCh02G015120.1 Cmo02g01512 377109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01512 149 PANTHER OS02G0640000 PROTEIN 2 145 - -
Cmo02g01512 149 PANTHER C2 DOMAIN-CONTAINING 2 145 - -
Cmo02g01512 149 Gene3D C2 domain 2 125 IPR035892 -
Cmo02g01512 149 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 125 IPR035892 -
Cmo02g01512 149 SMART C2_3c 5 102 IPR000008 -
Cmo02g01512 149 Pfam C2 domain 4 94 IPR000008 -
Cmo02g01512 149 MobiDBLite consensus disorder prediction 127 149 - -
Cmo02g01512 149 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01512 - - - cmo:103482722 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01512 Cmo-Chr2:8825626 Cmo04g02773 Cmo-Chr4:20023590 9.16E-24 dispersed
Cmo19g00604 Cmo-Chr19:6695864 Cmo02g01512 Cmo-Chr2:8825626 5.66E-09 dispersed
Cmo15g01275 Cmo-Chr15:8745105 Cmo02g01512 Cmo-Chr2:8825626 9.51E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00368 . . . . . . . . Cmo02g01512 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006097 0 2 2 1 3 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01512 Cmo_Chr02 FPKM 23.843578 21.067757 15.486301 12.882597 0.966461 0.923675 0.706911 0.339164 0.298968 0.376262