Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01523 | ATGGCTTCTTTGACTTCCTCTTCTTCGTCATCTTCATCGACCACGAAGCATCCTCTGTACAGAGGAATTCGGTGCAGGGGTGGAAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACGACACGCATATGGCTAGGTACATTTCCGACACCCGAGATGGCTGCCACAGCTTACGACGTTGCCGCTCTCGCTCTCCGAGGTGATCAAGCCATCCTTAACTTCCCCTCCTCTGTTGCCTCCTATCCTGTTCCTGCCTCCACCTCCCCGCTTGACATACGCAATGCTGCCTCCGCCGCCGCCAATGCGTTGAACAAAGTTGAGACTTGCAGCACTAACATTGAAGATAGTGGTAATACGGCGTCGTTCGTGGATGAGGAGGAGATTTTTGGGATGCCAAGTTTGCTGGCCGACATGGCGGAGGGGATGATGGTGTCGCCGCCAAGAATGAACTCTCCACCGCTGTCTGATGACAACTCCGATGGAACGGAATGTTTATGGAACTATTTTTTATGA | 513 | 52.83 | MASLTSSSSSSSSTTKHPLYRGIRCRGGKWVSEIREPRKTTRIWLGTFPTPEMAATAYDVAALALRGDQAILNFPSSVASYPVPASTSPLDIRNAASAAANALNKVETCSTNIEDSGNTASFVDEEEIFGMPSLLADMAEGMMVSPPRMNSPPLSDDNSDGTECLWNYFL | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8862933 | 8863445 | + | CmoCh02G015230.1 | Cmo02g01523 | 377120 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01523 | 170 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo02g01523 | 170 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 8 | 169 | - | - | |
Cmo02g01523 | 170 | SMART | rav1_2 | 19 | 81 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01523 | 170 | CDD | AP2 | 18 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01523 | 170 | Pfam | AP2 domain | 18 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01523 | 170 | PRINTS | Ethylene responsive element binding protein signature | 20 | 31 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01523 | 170 | PRINTS | Ethylene responsive element binding protein signature | 57 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01523 | 170 | PANTHER | ETHYLENE RESPONSE FACTOR | 8 | 169 | - | - | |
Cmo02g01523 | 170 | SUPERFAMILY | DNA-binding domain | 19 | 77 | IPR016177 | GO:0003677 | |
Cmo02g01523 | 170 | Gene3D | AP2/ERF domain | 19 | 77 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g01523 | 170 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01523 | 170 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01523 | Cmo-Chr2:8862933 | Cmo15g01262 | Cmo-Chr15:8661091 | 1.23E-69 | dispersed | |
Cmo02g01523 | Cmo-Chr2:8862933 | Cmo02g01524 | Cmo-Chr2:8865848 | 2.51E-38 | tandem | |
Cmo06g00728 | Cmo-Chr6:3732966 | Cmo02g01523 | Cmo-Chr2:8862933 | 7.95E-62 | transposed | |
Cmo16g01051 | Cmo-Chr16:7356312 | Cmo02g01523 | Cmo-Chr2:8862933 | 1.80E-60 | transposed | |
Cmo15g01261 | Cmo-Chr15:8654286 | Cmo02g01523 | Cmo-Chr2:8862933 | 2.47E-37 | wgd | |
Cmo16g00158 | Cmo-Chr16:718294 | Cmo02g01523 | Cmo-Chr2:8862933 | 4.70E-38 | wgd | |
Cmo02g01061 | Cmo-Chr2:6465361 | Cmo02g01523 | Cmo-Chr2:8862933 | 3.08E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9308 | PF00847 | AP2 | 1.30E-10 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01523 | - | - | cmax:111491416 | 301.212 |