Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01523 ATGGCTTCTTTGACTTCCTCTTCTTCGTCATCTTCATCGACCACGAAGCATCCTCTGTACAGAGGAATTCGGTGCAGGGGTGGAAAATGGGTGTCGGAGATCCGGGAGCCACGTAAGACGACACGCATATGGCTAGGTACATTTCCGACACCCGAGATGGCTGCCACAGCTTACGACGTTGCCGCTCTCGCTCTCCGAGGTGATCAAGCCATCCTTAACTTCCCCTCCTCTGTTGCCTCCTATCCTGTTCCTGCCTCCACCTCCCCGCTTGACATACGCAATGCTGCCTCCGCCGCCGCCAATGCGTTGAACAAAGTTGAGACTTGCAGCACTAACATTGAAGATAGTGGTAATACGGCGTCGTTCGTGGATGAGGAGGAGATTTTTGGGATGCCAAGTTTGCTGGCCGACATGGCGGAGGGGATGATGGTGTCGCCGCCAAGAATGAACTCTCCACCGCTGTCTGATGACAACTCCGATGGAACGGAATGTTTATGGAACTATTTTTTATGA 513 52.83 MASLTSSSSSSSSTTKHPLYRGIRCRGGKWVSEIREPRKTTRIWLGTFPTPEMAATAYDVAALALRGDQAILNFPSSVASYPVPASTSPLDIRNAASAAANALNKVETCSTNIEDSGNTASFVDEEEIFGMPSLLADMAEGMMVSPPRMNSPPLSDDNSDGTECLWNYFL 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8862933 8863445 + CmoCh02G015230.1 Cmo02g01523 377120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01523 170 MobiDBLite consensus disorder prediction 1 20 - -
Cmo02g01523 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 169 - -
Cmo02g01523 170 SMART rav1_2 19 81 IPR001471 GO:0003700|GO:0006355
Cmo02g01523 170 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Cmo02g01523 170 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Cmo02g01523 170 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Cmo02g01523 170 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Cmo02g01523 170 PANTHER ETHYLENE RESPONSE FACTOR 8 169 - -
Cmo02g01523 170 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Cmo02g01523 170 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Cmo02g01523 170 ProSiteProfiles AP2/ERF domain profile. 19 75 IPR001471 GO:0003700|GO:0006355
Cmo02g01523 170 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01523 Cmo-Chr2:8862933 Cmo15g01262 Cmo-Chr15:8661091 1.23E-69 dispersed
Cmo02g01523 Cmo-Chr2:8862933 Cmo02g01524 Cmo-Chr2:8865848 2.51E-38 tandem
Cmo06g00728 Cmo-Chr6:3732966 Cmo02g01523 Cmo-Chr2:8862933 7.95E-62 transposed
Cmo16g01051 Cmo-Chr16:7356312 Cmo02g01523 Cmo-Chr2:8862933 1.80E-60 transposed
Cmo15g01261 Cmo-Chr15:8654286 Cmo02g01523 Cmo-Chr2:8862933 2.47E-37 wgd
Cmo16g00158 Cmo-Chr16:718294 Cmo02g01523 Cmo-Chr2:8862933 4.70E-38 wgd
Cmo02g01061 Cmo-Chr2:6465361 Cmo02g01523 Cmo-Chr2:8862933 3.08E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9308 PF00847 AP2 1.30E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01523 - - cmax:111491416 301.212