Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01524 ATGGATTTTTTCACCCAATTTTCTGATCCTATTCCTTATTATGGTAATTATAATTGCAAGTCGGAATCTTCGTCCACTCTGTCAGACGCCGGAACGCCGCCCCACGTGGTCGCTAACTCCGACGAGGAAGTGATACTGGCGTCGAACCGGCCGAAGCGCCGGGCTGGTCGGCGGGTTTTTAAGGAGACGAGGCATCCAGTGTACAGAGGAGTGCGGCGGAGGAATAAAGGCAAATGGGTGTGTGAGCTAAGGGAGCCGAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACTGCTGAGATGGCGGCACGTGCACACGACGTTGCGGCACTCGCGTTGAGAGGAAAATCGGCTTGTCTCAATTTTGCTGACTCAGCTTGGCGGTTTCCGATTCCATCGAGTAATGATCCGTCGGTGATCAGAGAAGCGGCGGCGAAGGCGGCGAAAGAATGTGAGTATGAAGAGTGCAATGTGAGTCGGGAAGAGGACGAGGTGGTTTTGAGTCAGCCAAAGGCGGAGCCTGATCAACGGGATTACGTCGACGACGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACCTCTGCTTTCTCCTCCTCGTTTTTGCTTACGCGATGACGTGGAGTGGGACAACGTGGATACAAATGATGATGTAGAAGCGGCGGCGAAGGCGGCGAAAGAATGTGAGTATGAAGAGTGCAATGTGAGTCGGGAAGAGGACGAGGTGGTTTTGAGTCAGCCAAAGGCGGAGCCTGATCAACGGGATTACGTCGACGACGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACCTCTGCTTTCTCCTCCTCGTTTTTGCTTACGCGATGACGTGGAGTGGGACAACGTGGATACAAATGATGATGTGTCATTGTGGAGCTTTTAG 936 52.99 MDFFTQFSDPIPYYGNYNCKSESSSTLSDAGTPPHVVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNKGKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPSSNDPSVIREAAAKAAKECEYEECNVSREEDEVVLSQPKAEPDQRDYVDDEALSNMPMLLASMAEGPLLSPPRFCLRDDVEWDNVDTNDDVEAAAKAAKECEYEECNVSREEDEVVLSQPKAEPDQRDYVDDEALSNMPMLLASMAEGPLLSPPRFCLRDDVEWDNVDTNDDVSLWSF 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8865848 8867506 + CmoCh02G015240.1 Cmo02g01524 377121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01524 311 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cmo02g01524 311 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Cmo02g01524 311 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Cmo02g01524 311 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Cmo02g01524 311 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Cmo02g01524 311 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Cmo02g01524 311 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Cmo02g01524 311 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Cmo02g01524 311 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 231 311 - -
Cmo02g01524 311 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 224 - -
Cmo02g01524 311 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 224 IPR045277 GO:0003700
Cmo02g01524 311 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 231 311 IPR045277 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01524 Cmo15g01261 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01524 Cmo-Chr2:8865848 Cmo15g01261 Cmo-Chr15:8654286 2.33E-32 dispersed
Cmo02g01523 Cmo-Chr2:8862933 Cmo02g01524 Cmo-Chr2:8865848 2.51E-38 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9309 PF00847 AP2 1.70E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01524 - - bhj:120092445 368.622