Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01534 ATGGTGAGGGGAAAAACTCAAATGAAGCGCATAGAGAATGCTACAAGCCGGCAAGTGACCTTCTCAAAGCGGAGAAATGGGCTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATTATGTGTACAAACAACCAAGGTTTAGAAGATGTGCAGTTGGAGAAGGAATTTGACTCATTTACCATGACTAAGAAGTTACAGCACCTTGAAGTTTGTAAAAGAAAATTAATGGGAGATGGCTTGGATTTGTGCTCCATGGAAGAGTTACAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACAAAAATTAGGTCAAGAAAGTATCAATTACTGAAGGAAGAAATTACGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCTCTCCTGAAGAAGGTTGGAAGTGAATGGAACCGCCAAGAAGAGGCCATGGATGTTGAGACCCAACTGTTCATAGGGCCATCAGACAGAAGAGGTGGCAGTGGCTTCCTGTGTAGATATCTTCATAATCAACCCACTTAA 639 40.85 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDGLDLCSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWNRQEEAMDVETQLFIGPSDRRGGSGFLCRYLHNQPT 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8913207 8915531 + CmoCh02G015340.1 Cmo02g01534 377131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01534 212 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cmo02g01534 212 PANTHER MADS-BOX PROTEIN SOC1 1 195 - -
Cmo02g01534 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo02g01534 212 Coils Coil 122 142 - -
Cmo02g01534 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo02g01534 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo02g01534 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo02g01534 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo02g01534 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo02g01534 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo02g01534 212 PANTHER MADS BOX PROTEIN 1 195 - -
Cmo02g01534 212 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Cmo02g01534 212 Coils Coil 144 171 - -
Cmo02g01534 212 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Cmo02g01534 212 Pfam K-box region 97 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo02g01534 212 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01534 Cmo06g01143 CCT
Cmo02g01534 Cmo15g01250 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01534 Cmo-Chr2:8913207 Cmo08g00912 Cmo-Chr8:5937954 6.79E-68 dispersed
Cmo15g01250 Cmo-Chr15:8582334 Cmo02g01534 Cmo-Chr2:8913207 1.97E-100 wgd
Cmo02g01041 Cmo-Chr2:6328409 Cmo02g01534 Cmo-Chr2:8913207 4.67E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9310 PF01486 K-box 2.00E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01534 - - csv:101220518 290.812