Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01539 ATGGTTGCTTTCCCTTCTCTTTTTCTTCTTCTATTGCTCAACTTTCATTATGTTGGGGCTTTAGTGACTGAGCTTCCGTTGATCAATCTTCAAACGTACATTGTCCATGTGAAGAAACCAGAGACAACGGACGATCTCGAGATCTGGCATCGATCGTTCTTACCGTCGAGTTCGAGTTTGCTATACTCATATCGAAATGTGATGAGTGGTTTTGCTGCAAGACTAAGTGAAGAACAAGTGAAAGCAATGGAAGAGATGGATGGTTTTGTGTCAGCAAGGCGAGAAAGGATATTGCAATTGCATACAACTCACACCCCTGATTTTCTTGGATTGAATCGCCAATTTGGGTTTTGGAAAGATTCAAACTTTGGAAAGGGAGTGATCATAGGAGTGTTGGATGGCGGAATTGCGCCAAGCCATCCTTCATTTGATGATGTGGGAATGCCACCACCGCCACCCAAATGGAAAGGAAGATGCGAGTTTAATTTCTCAGCCTGCAACAACAAGCTTATAGGTGCCAGATCTTTTAATCTCGCAACAAAAGCCTTGAAAGGAGAGACAATGATGGATGACTCTCCTATTGATGAAGATGGTCATGGGACTCACACAGCGAGCACAGCTGCTGGTGCCTTCGTCAAGGGCGCTGAGGCATTGGGAAACGCTAAAGGCACGGCCGTTGGCATGGCCCCTTTAGCTCATCTAGCAATTTACAAAGTTTGCTTTGGAGAAGACTGCCCTGATACCGACATTCTCGCAGCACTTGATGCCGCTATTGAAGACGGCGTCGATGTGCTCTCACTCTCGCTTGGGAGCCCATCGGTTCCATTCTTCCAAGACTTAGTCGCCATAGGTGCATTCGCAGCCATTCAAAAGGGGATTTTTGTGAGTTGCTCAGCTGCTAATTCAGGCCCTTTTAAAGCCACATTGTCCAACGAAGCGCCGTGGATTCTAACGGTTGCAGCCAGCACCATTGATCGAAGAATCAAAGCCGCTGCAAAGCTTGGAAATGGAGAAGAATTTGATGGCGAATCTCTGTTCCAACCAAGTGATTTCCCACCAACATTGTTGCCACTTGTTTACGCTGGTGAGAAGAATCAAACAGCCGCTTTGTGTGGAGAAGGATCATTGAAAGACATAGACGTAAAGGGAAAAGTTGTGGTATGCGAAAGAGGAGGAGGAATTGCAAGAATTGCAAAAGGGACCGAAGTCAAGAACGCAGGGGGCGCCGCCATGATCCTCCTAAACCAACAACAAGATGGGTTCAGTACCGAAGCAGATGCTCACGTTCTTCCGGCAAGCCACGTCAGCCACAAGGCGGCGTTGAAGATCAAAGCCTACATAAACTCAACAACATACCCAACAGCCACAATTCTTTTCAAAGGAACCGTAATTGGCGATGACAACTTTTCACCCGCCATAGCTTCTTTTTCATCTCGAGGTCCCAGCGTTGCAAGCCCTGGAATTTTGAAGCCCGACATAACCGGTCCAGGTGTCAGCATTTTAGCCGCATGGCCATTTCCCTTAGACAAAAACAGAAACACAAAATCAACATTCAACATAATTTCAGGAACATCCATGTCCTGTCCTCATCTCAGCGGCATTGCAGCTCTAATCAAAAGCTCTCACCCTGATTGGTCACCGGCCGCCATTAAATCCGCCATAATGACAACCGCTGACATAACAAATCTTGAAGGCCAACCAATTGTGGATGAAAATTTACAACCGGCGGATTTGTTTGCAACTGGCGCCGGTCATGTCAACCCATCAAAAGCAGCCGACCCAGGATTAGTTTATGACATTCAACCCGATGATTACATTCCTTATCTTTGTGGATTGGGATACAAAAGTAACGAAGTTGCAACAATTGCCCGTAAACCAATTAATTGTTTGGCAAAACCAAGCATTCCCGAAGGAGACCTCAACTATCCATCATTTACGGTCGTTTTAGGACCGCCGCAAACATTTACAAGAACAGTAACGAATGTCGGGTGTGGACGTGAAGTTTATACTGCCGTGGTCGAAGCACCGCCGTCCATTTCTGTAACAATCCGACCAAGTAAGATATTCTTCTCAAAGATTAACCAAAAAGTGACATTTTCAGTGACGTTCAAGAGAATTGGTTCGATTAGTCCCTCAACAGAATTTGGTAAAGGATATCTCAAATGGGTTTCCGACAAACACGTCGTTAGAAGTCCGATCTCTTTTAAGTTTGCATGA 2217 45.69 MVAFPSLFLLLLLNFHYVGALVTELPLINLQTYIVHVKKPETTDDLEIWHRSFLPSSSSLLYSYRNVMSGFAARLSEEQVKAMEEMDGFVSARRERILQLHTTHTPDFLGLNRQFGFWKDSNFGKGVIIGVLDGGIAPSHPSFDDVGMPPPPPKWKGRCEFNFSACNNKLIGARSFNLATKALKGETMMDDSPIDEDGHGTHTASTAAGAFVKGAEALGNAKGTAVGMAPLAHLAIYKVCFGEDCPDTDILAALDAAIEDGVDVLSLSLGSPSVPFFQDLVAIGAFAAIQKGIFVSCSAANSGPFKATLSNEAPWILTVAASTIDRRIKAAAKLGNGEEFDGESLFQPSDFPPTLLPLVYAGEKNQTAALCGEGSLKDIDVKGKVVVCERGGGIARIAKGTEVKNAGGAAMILLNQQQDGFSTEADAHVLPASHVSHKAALKIKAYINSTTYPTATILFKGTVIGDDNFSPAIASFSSRGPSVASPGILKPDITGPGVSILAAWPFPLDKNRNTKSTFNIISGTSMSCPHLSGIAALIKSSHPDWSPAAIKSAIMTTADITNLEGQPIVDENLQPADLFATGAGHVNPSKAADPGLVYDIQPDDYIPYLCGLGYKSNEVATIARKPINCLAKPSIPEGDLNYPSFTVVLGPPQTFTRTVTNVGCGREVYTAVVEAPPSISVTIRPSKIFFSKINQKVTFSVTFKRIGSISPSTEFGKGYLKWVSDKHVVRSPISFKFA 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8934923 8937139 - CmoCh02G015390.1 Cmo02g01539 377136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01539 738 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 27 734 IPR045051 -
Cmo02g01539 738 SUPERFAMILY PA domain 346 438 IPR046450 -
Cmo02g01539 738 Pfam PA domain 357 442 IPR003137 -
Cmo02g01539 738 CDD Peptidases_S8_3 98 559 IPR034197 -
Cmo02g01539 738 ProSiteProfiles Serine proteases, subtilase domain profile. 108 592 - -
Cmo02g01539 738 Gene3D Peptidase S8/S53 domain 126 605 IPR036852 GO:0004252|GO:0006508
Cmo02g01539 738 Pfam Peptidase inhibitor I9 32 101 IPR010259 -
Cmo02g01539 738 Gene3D - 609 737 - -
Cmo02g01539 738 CDD PA_subtilisin_like 333 457 - -
Cmo02g01539 738 SUPERFAMILY Subtilisin-like 100 596 IPR036852 GO:0004252|GO:0006508
Cmo02g01539 738 PRINTS Subtilisin serine protease family (S8) signature 124 143 IPR015500 -
Cmo02g01539 738 PRINTS Subtilisin serine protease family (S8) signature 195 208 IPR015500 -
Cmo02g01539 738 PRINTS Subtilisin serine protease family (S8) signature 522 538 IPR015500 -
Cmo02g01539 738 Pfam Subtilase family 124 570 IPR000209 GO:0006508|GO:0008236
Cmo02g01539 738 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 28 101 IPR037045 -
Cmo02g01539 738 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 27 734 - -
Cmo02g01539 738 Gene3D - 325 464 - -
Cmo02g01539 738 Pfam Fibronectin type-III domain 639 734 IPR041469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01539 - - - cpep:111786140 1323.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01539 Cmo16g01045 CCT
Cmo02g01539 Cmo16g01045 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01539 Cmo-Chr2:8934923 Cmo10g00800 Cmo-Chr10:3726208 0 dispersed
Cmo02g01539 Cmo-Chr2:8934923 Cmo04g00042 Cmo-Chr4:245545 6.89E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g434 . . . . . . . . . Cmo16g01045 Cma02g01498 . Car02g01261 . . . Cpe05g00291 . . . . . . . . . . . . . . Cone8ag0344 . . . . Csa05g00344 Chy09g01163 . . . Bda07g00509 . . . . . . Cmo02g01539 . . . . . . . Bhi12g00343 . . . Hepe06g1605 . Lcy12g1726 . . . . . . . Lsi09g00337 . . Cme09g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002315 3 2 1 2 2 2 1 1 3 3 2 2 1 2 2 1 2 3 1 1 2 8 1 0 2 5 1 1 2 3 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01539 Cmo_Chr02 FPKM 0.757895 2.859381 2.806167 4.079042 4.846089 3.577042 3.691814 4.43133 3.599878 3.956645