Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01551 ATGGAGGGAAGAGATGGTGGTGCAAGTAGTGGAGTTACTGTTGTGGGATCAGATGCTCCATCGGAGTATCAAATAGCTCCCAGAACCACTGATAACCCACCGCAGACCGGTGGATCAACGCCATCTGCGGCGGAGGCGGCGGCTTCTCAACCAGCTTCGACTCCGCTGCCCACGGCGGCCTCCTCAGTTCCGGGAAAGAAGAAAAGAGGGCGGCCGAGAAAATATGGACCCGATGGCTCTGTCAGTATGGCTCTGTCTCCGAAGCCAATATCATCATCGGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTGCGGCCGGCGAGCGCTGTGAGCAAAAGAAAGTTCGAAGTGGATAATTTAGGTGACTGGGTTCCATGTTCTGTTGGTGCAAATTTTACACCTCATATCATCACTGTCAACACAGGCGAGGATGTCACAATGAAGATAATATCCTTTTCTCAGCAAGGGCCTCGAGCTATATGTATTTTGTCTGCAAACGGTGTGATCTCAAGTGTCACTCTCCGTCAGCCTGACTCCTCTGGAGGAACACTAACATATGAGGGTCGCTTCGAAATACTGTCCTTGTCTGGCTCATTCATGCCTAGTGATAATGGAGGAACTCGAGGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTCGTAGTAGGGAGTTTTCTATCTGGAAACCAACAAGAGCAGAACCCAAAAAAGCCAAAACAAGATACTATTTCAACGGCCTCTCCAACCGCTGCCATTCCGATATCTTGTGTCGATCCTAAGTCCAACCTCTCCCCCTCGAGCTCCTTTCGTGGCGATAACTGGTCGATGCTGCCAAATGATTCAAGGAATAAGCCAACTGATATCAATGTACCCCTACCCAGTGCATGA 969 50.88 MEGRDGGASSGVTVVGSDAPSEYQIAPRTTDNPPQTGGSTPSAAEAAASQPASTPLPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKRKFEVDNLGDWVPCSVGANFTPHIITVNTGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRGRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQQEQNPKKPKQDTISTASPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPNDSRNKPTDINVPLPSA 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8983157 8986502 - CmoCh02G015510.1 Cmo02g01551 377148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01551 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 320 IPR039605 GO:0003680
Cmo02g01551 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 320 - -
Cmo02g01551 322 MobiDBLite consensus disorder prediction 256 322 - -
Cmo02g01551 322 ProSiteProfiles PPC domain profile profile. 134 276 IPR005175 -
Cmo02g01551 322 MobiDBLite consensus disorder prediction 286 322 - -
Cmo02g01551 322 CDD DUF296 138 229 IPR005175 -
Cmo02g01551 322 Gene3D - 139 268 - -
Cmo02g01551 322 MobiDBLite consensus disorder prediction 23 60 - -
Cmo02g01551 322 MobiDBLite consensus disorder prediction 1 97 - -
Cmo02g01551 322 MobiDBLite consensus disorder prediction 256 278 - -
Cmo02g01551 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Cmo02g01551 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01551 Cmo-Chr2:8983157 Cmo06g00770 Cmo-Chr6:4004220 3.07E-114 dispersed
Cmo08g00884 Cmo-Chr8:5731032 Cmo02g01551 Cmo-Chr2:8983157 1.33E-66 dispersed
Cmo15g01234 Cmo-Chr15:8497053 Cmo02g01551 Cmo-Chr2:8983157 4.09E-180 wgd
Cmo16g01081 Cmo-Chr16:7648276 Cmo02g01551 Cmo-Chr2:8983157 4.47E-129 wgd
Cmo02g01022 Cmo-Chr2:6215634 Cmo02g01551 Cmo-Chr2:8983157 6.06E-78 wgd
Cmo02g01551 Cmo-Chr2:8983157 Cmo06g01158 Cmo-Chr6:8884280 4.93E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01551 - - csv:101210208 507.679