Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01554 ATGGATGCCCACTCTCTTCCGCCTCCTTTCCACACCCGGGATTTCCATCTCCAACAACAATACCACCACAACAGTAATTCTGAAGAAGAACACAGCGCCACCACTACTCGTCTCAAACGAGATCGCGACGATGATGACCACAACAACTCTGCCCCCACCAGCGCTGGGGACGCTGCCGCTGCTGATGGAGAGATTACTCGACGACCCAGAGGAAGACCCGCCGGATCCAAGAATAAACCCAAGCCACCAATTATTATTACTCGCGACAGTGCCAACGCCCTTCGAACTCATGTCATCGAAGTCACCGACGGCTGTGACATCGTCGACAGCGTCGCCACCTTCGCTCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGTACTGGCACCGTCACGAACGTCACTCTCCGCCAGCCGGCCTCCCCTGGTGCAATTGTCAACTTACATGGTCGCTTTGAGATCTTATCTCTTGCCGGCTCCTTCCTCCCTCCGCCGGCTCCTCCGGCTGCAACCAGCTTAACCATTTACCTCGCCGGCGGTCAGGGGCAGGTAGTCGGTGGTAGCGTTGTTGGTACTTTGGTCGCCTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTATGAACGCCTGCCGTTGGAAGACGACGACCAACCGCCCATGCCGCCACTGCAGGGCGGAGGCGGAATTGGGTCTCCGGATGAAGTTGGACAGTCCCAACCGCCGCAAACAGCGCATCATCAACAGCAACAACAACTTCTGGGCGACGGAAATGTGCCGTTATTTCACGGTTTGCCTCCGAATCTGTTAAACTCAATTCAAATGCCGCCATCGGAAGCAGCTTATTGGGGTACTGCTCGACCTCCATACTAA 882 56.8 MDAHSLPPPFHTRDFHLQQQYHHNSNSEEEHSATTTRLKRDRDDDDHNNSAPTSAGDAAAADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTAHHQQQQQLLGDGNVPLFHGLPPNLLNSIQMPPSEAAYWGTARPPY 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9006756 9007637 + CmoCh02G015540.1 Cmo02g01554 377151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01554 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 293 IPR014476 GO:0003680
Cmo02g01554 293 Gene3D - 94 221 - -
Cmo02g01554 293 PIRSF ESCAROLA 10 293 IPR014476 GO:0003680
Cmo02g01554 293 ProSiteProfiles PPC domain profile profile. 91 227 IPR005175 -
Cmo02g01554 293 CDD DUF296 95 162 IPR005175 -
Cmo02g01554 293 MobiDBLite consensus disorder prediction 1 85 - -
Cmo02g01554 293 MobiDBLite consensus disorder prediction 215 264 - -
Cmo02g01554 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 293 - -
Cmo02g01554 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Cmo02g01554 293 MobiDBLite consensus disorder prediction 239 259 - -
Cmo02g01554 293 MobiDBLite consensus disorder prediction 23 50 - -
Cmo02g01554 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01554 Cmo-Chr2:9006756 Cmo17g00030 Cmo-Chr17:135628 1.47E-90 dispersed
Cmo15g01236 Cmo-Chr15:8513916 Cmo02g01554 Cmo-Chr2:9006756 1.59E-150 wgd
Cmo02g01554 Cmo-Chr2:9006756 Cmo06g01155 Cmo-Chr6:8855557 1.90E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01554 - - csv:101209716 423.705