Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01579 ATGGTGAAGTTGGCTGTTGGTTCCCCCGCTGATTCCTTCAGTGCCGCCTCTCTTAAAGCTTATCTCTCTGAGTTCATCGCCACTCTCCTTTTTGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATCCACCAGGTCTGGTGGCCGTGGCCGTGGCTCATGCATTCGCTCTCTTCGTCGGAGTGTCGATGGCCGCGAACATCTCCGGTGGCCATCTCAACCCCGCGGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAGTCGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGTGTGGCAGCGGGATTGGGAGCGATTGAGGGTGTAGTGTTCGAGATCATAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCTAAAAAGGGCTCTCTTGGGACCATCGCCCCAATTGCTATTGGGTTCATAGTCGGTGCCAACATCCTTGCTGCCGGCCCATTTAGCGGTGGGTCCATGAACCCAGCCCGTTCATTCGGCCCAGCTGTTGTCAGTGGAGACTTCTCTCAAATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATCTATGGTGACGTCTTTATTGGGTCTTATGCCTCTGTTCCAGTCTCTGATGACTATGCTTAA 753 56.04 MVKLAVGSPADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSDDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9115713 9117027 - CmoCh02G015790.1 Cmo02g01579 377176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01579 250 Gene3D Glycerol uptake facilitator protein. 2 246 IPR023271 -
Cmo02g01579 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cmo02g01579 250 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
Cmo02g01579 250 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Cmo02g01579 250 PANTHER AQUAPORIN TIP2-2-RELATED 1 250 - -
Cmo02g01579 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo02g01579 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01579 Cmo-Chr2:9115713 Cmo08g00682 Cmo-Chr8:4365247 1.37E-126 dispersed
Cmo02g01579 Cmo-Chr2:9115713 Cmo07g00921 Cmo-Chr7:4427126 1.77E-102 transposed
Cmo02g01579 Cmo-Chr2:9115713 Cmo03g01198 Cmo-Chr3:9354988 3.41E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01579 K09873 - csv:101203925 457.218