Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01597 ATGTCATCCTCTTCTTCTTCTCCTACTTCTTCTACTACTACTACCACTCAGCAGCAGCAGCAGCAGCAGCAGCTGGACCACCACCTTCCCTCACCTGAGCAGCTCTGTTATGTCCATTGTAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTCGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCCTACAACCGCTTCATCAAAGATGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAGGCCTTCAGTGCTGCTGCTAAGAATTGGGCACACTTTCCACATATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGGCAGCAGGAGGGAGATCATGGGAGTGTTGTGATGAAAGACAATGGATTCTACGCCGCCGCCGCCGCCTCACCCAACGTTGGTGTCTCCCATTTCTAA 714 49.72 MSSSSSSPTSSTTTTTQQQQQQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDHGSVVMKDNGFYAAAAASPNVGVSHF 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9202861 9204633 - CmoCh02G015970.1 Cmo02g01597 377194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01597 237 PANTHER PROTEIN YABBY 6-RELATED 1 235 IPR006780 GO:0007275
Cmo02g01597 237 SUPERFAMILY HMG-box 138 187 IPR036910 -
Cmo02g01597 237 Pfam YABBY protein 32 194 IPR006780 GO:0007275
Cmo02g01597 237 Gene3D High mobility group box domain 139 202 IPR036910 -
Cmo02g01597 237 MobiDBLite consensus disorder prediction 1 26 - -
Cmo02g01597 237 PANTHER AXIAL REGULATOR YABBY 3 1 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01597 Cmo-Chr2:9202861 Cmo11g00535 Cmo-Chr11:2613770 1.41E-56 dispersed
Cmo04g01827 Cmo-Chr4:9186167 Cmo02g01597 Cmo-Chr2:9202861 5.26E-32 dispersed
Cmo15g01209 Cmo-Chr15:8382484 Cmo02g01597 Cmo-Chr2:9202861 1.47E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9314 PF04690 YABBY 5.20E-71 CL0114 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01597 K25796 - csv:101214748 400.593