Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01608 ATGCACCACAGCACAAAAACAGAGCCGGATTTTGCATATCTTGGCCCAATTCGCCGCCATTTGTTAGGCGAATCGGATGCCGCCGGTCCCGTTTTCAACCAGACTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGGCGACAACTGGGGCGATTTGCCACTCAAAGTGGATGACTCTGAAGATATGCTTCTCGCTGCTGTTCTCGGGGATGCCGTCGGTGCTGGATGGGTGCCGTCGCTTGGAAGTTGCGATTTTGGGTTCTCGGCGGTGAAGTCGGAGCCGGAGATGATTCCCGTAAGTTTTCCACCGGTGCAACCCAATGTGGCGGTGAGGCCGGCGGTGGTACCGCACAAGGGTAAGCATTACAGAGGAGTGCGGCAACGGCCGTGGGGGAAGTTTGCAGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTTGGAACCTATGAGACGGCGGAGGATGCCGCCCTAGCTTATGATCGGGCAGCCTACCGAATGAGAGGCTCGAGAGCTCTACTCAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTCGAATCACGTCGAAGCGATCCTCGCCGGATCTTTCTTCTTCGCCAAAGCGGCGGAAGAAGGCCACCTCCGCCGTCGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACGTGGAGGGCAGATGTTTGTCAGCCAATGCTAA 723 56.43 MHHSTKTEPDFAYLGPIRRHLLGESDAAGPVFNQTGSFSSLIPCLGDNWGDLPLKVDDSEDMLLAAVLGDAVGAGWVPSLGSCDFGFSAVKSEPEMIPVSFPPVQPNVAVRPAVVPHKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRITSKRSSPDLSSSPKRRKKATSAVEGGGVQVEQQVASFTRGGQMFVSQC 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9252223 9252945 + CmoCh02G016080.1 Cmo02g01608 377205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01608 240 PANTHER BNAANNG21280D PROTEIN 18 221 - -
Cmo02g01608 240 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Cmo02g01608 240 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Cmo02g01608 240 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Cmo02g01608 240 MobiDBLite consensus disorder prediction 186 222 - -
Cmo02g01608 240 Gene3D AP2/ERF domain 120 182 IPR036955 GO:0003700|GO:0006355
Cmo02g01608 240 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Cmo02g01608 240 PANTHER DNA-BINDING DOMAIN 18 221 IPR044808 GO:0003700|GO:0009873
Cmo02g01608 240 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Cmo02g01608 240 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Cmo02g01608 240 SUPERFAMILY DNA-binding domain 121 181 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01608 Cmo-Chr2:9252223 Cmo15g01157 Cmo-Chr15:8084427 7.58E-113 dispersed
Cmo16g01167 Cmo-Chr16:8316409 Cmo02g01608 Cmo-Chr2:9252223 7.35E-94 wgd
Cmo02g01608 Cmo-Chr2:9252223 Cmo06g00825 Cmo-Chr6:4480571 2.56E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9315 PF00847 AP2 8.60E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01608 K09286 - csv:101221583 382.874