Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01608 | ATGCACCACAGCACAAAAACAGAGCCGGATTTTGCATATCTTGGCCCAATTCGCCGCCATTTGTTAGGCGAATCGGATGCCGCCGGTCCCGTTTTCAACCAGACTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGGCGACAACTGGGGCGATTTGCCACTCAAAGTGGATGACTCTGAAGATATGCTTCTCGCTGCTGTTCTCGGGGATGCCGTCGGTGCTGGATGGGTGCCGTCGCTTGGAAGTTGCGATTTTGGGTTCTCGGCGGTGAAGTCGGAGCCGGAGATGATTCCCGTAAGTTTTCCACCGGTGCAACCCAATGTGGCGGTGAGGCCGGCGGTGGTACCGCACAAGGGTAAGCATTACAGAGGAGTGCGGCAACGGCCGTGGGGGAAGTTTGCAGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTTGGAACCTATGAGACGGCGGAGGATGCCGCCCTAGCTTATGATCGGGCAGCCTACCGAATGAGAGGCTCGAGAGCTCTACTCAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTCGAATCACGTCGAAGCGATCCTCGCCGGATCTTTCTTCTTCGCCAAAGCGGCGGAAGAAGGCCACCTCCGCCGTCGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACGTGGAGGGCAGATGTTTGTCAGCCAATGCTAA | 723 | 56.43 | MHHSTKTEPDFAYLGPIRRHLLGESDAAGPVFNQTGSFSSLIPCLGDNWGDLPLKVDDSEDMLLAAVLGDAVGAGWVPSLGSCDFGFSAVKSEPEMIPVSFPPVQPNVAVRPAVVPHKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRITSKRSSPDLSSSPKRRKKATSAVEGGGVQVEQQVASFTRGGQMFVSQC | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9252223 | 9252945 | + | CmoCh02G016080.1 | Cmo02g01608 | 377205 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01608 | 240 | PANTHER | BNAANNG21280D PROTEIN | 18 | 221 | - | - | |
Cmo02g01608 | 240 | PRINTS | Ethylene responsive element binding protein signature | 122 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01608 | 240 | PRINTS | Ethylene responsive element binding protein signature | 145 | 161 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01608 | 240 | CDD | AP2 | 120 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01608 | 240 | MobiDBLite | consensus disorder prediction | 186 | 222 | - | - | |
Cmo02g01608 | 240 | Gene3D | AP2/ERF domain | 120 | 182 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo02g01608 | 240 | ProSiteProfiles | AP2/ERF domain profile. | 121 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01608 | 240 | PANTHER | DNA-BINDING DOMAIN | 18 | 221 | IPR044808 | GO:0003700|GO:0009873 | |
Cmo02g01608 | 240 | Pfam | AP2 domain | 121 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01608 | 240 | SMART | rav1_2 | 121 | 185 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo02g01608 | 240 | SUPERFAMILY | DNA-binding domain | 121 | 181 | IPR016177 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01608 | Cmo-Chr2:9252223 | Cmo15g01157 | Cmo-Chr15:8084427 | 7.58E-113 | dispersed | |
Cmo16g01167 | Cmo-Chr16:8316409 | Cmo02g01608 | Cmo-Chr2:9252223 | 7.35E-94 | wgd | |
Cmo02g01608 | Cmo-Chr2:9252223 | Cmo06g00825 | Cmo-Chr6:4480571 | 2.56E-30 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9315 | PF00847 | AP2 | 8.60E-15 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01608 | K09286 | - | csv:101221583 | 382.874 |