Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01613 ATGGAAGCTAGAATTGTCCCAGAAAGTAAGGGCACAGTGACCTCCGAGAGAGGGCAATTTCGAGGAATCCGAATGGACAATCCCTTTACTTTGAAGGTGGGTCAGATATTTACAGGGTTCGGCGTCGGTTGTGGCGTCGGTATCGGCGTTGGCCGACCCATAAACATGGCAGCTGCACGAGCCTTCCTACATGCCATAAATGACCTACGAAGCGGAAGAATCCTAGAACAAAATGAGAGTCTTGCTACTATACGAACGTATGAAACCGATATTCATATATTTTCAGGTGCAATACCTGTCATGAATGAAGTAATGAGTGCCACGAGAGGTGCAACCGACGCACTTTCTGGTGTAACCAGGCATTTAAACAACTCTCTCAGGAAATTAGGAGCTAAGAACATCCAAGGTGGCATTGGGTGTGGAGTTGGTTTTGGCCATGGTTTTGGCGTCGGCCTAGCTATCAAGCCTTCATTTCTACAACAAGTTCAATCTTCTGTTATGCAAGCAATGGAGAAGATGGTGACAAAATTAGGTAACAATCCTAATCTTGCAATTAGTCAAAGCGCTGTACCAGTATCACTGCAATCTGCCATGAGCATAACAAATGCTTCGGCTAACAAGCATCCTGTTGCAAGCATTAGAGAGTTTGCAAAAGAAATGCCAGAAACTGCCCCACAAAACCTATTGAGCAGCAGATCGTTTGAAACTCGAACCGAAAAGGTCATCGACAGTTTCTTGCAGAATCCTGTTTTTAAAGGAGGGGATACTGAACTGCAGGATGAGGTTGGACGCCTACCGCTCGAAAACCGTCTCTTTCAAATGAAACTAATTCAAGAGCTTAAGGAGGAGAATAACAAGCTTCACCAAATATTAGTGGAAGACCTGAAAATACCACCCAGCAGGCTCCAAGCAAGTAACACAGGATCCAGAAACCGTTGGAGCTATGATTCTCACAAGAATTCCCGCCAGATTTCGCCGGCCGTTCAATCTCATCTCCAGCAGGTTTACCTTACTCTAGGTTGTGCTTTAGTTGCATCTGCGGCTGGAGCTTATCTTCATATGCTTTGGAACATTGGCGGTGTTCTCACAACACTTGCTGGTATCGGAAGCATCGCATGGCTAATGGTCACTCCTCCATATGAAGAGAAAAAGAGGGTTTCTATGTTAATGGCGGCTGCTCTTCTTCAAGGAGCTTCAATTGGTCCTTTGATCAGTGTGGCTATTGAGATTGATCCGAGTGTTCTGGTCAGTGCATTTGTGGGAACGGCAGTGGCCTTTGGTTGCTTTTCAGCAGCAGCCATGTTAGCAAGGCGCAGAGAATTCCTTTATCTGGGTGGCCTGCTTTCATCTGGAATATCCATGTTACTCTGGCTGCGTTTTGCTTCCTCTATATTCGGTGGTTCCACTGCCATTTTCAAGTTTGAGCTCGAAGCAAACCCGCCCCCGCAAGGGAAAGAAACACAGCGTCTCGGCATCACTGCGTTCGTTCCAAATAGATCGATGGCTTCATCTGTTGGAGGGATTTGGATGGACAAGGTTTTAGAGTTTGGACGAAGAGCCCTCTTCTACGTTAAAGTCCTCTCCGGCTATGAAGAGCGGCGGATTCGATCGTTAAGGTTGGAGCTCGAAAAGCGTCTCAAGAAGGCAGAGGAAAGAAAAGCTGCAATAAGACAGATACCAGAACAGGCTATCTTAGGAGAAGTTCGTCGCATGGTCGAGGAGATGCAGACTCTAAATAAAAAGTTAGAGGAAACCGAGTCTGCCATTGAAGAGTACTTCAAACCAATCGACAAAGAAGTAGAGGCATTAATGAGAGTGCAACTTGAAGGAGAAGAGAGAACAATGAAGAACATGGTTAAAGTGATCCAGCAACAGGCTTTGTTAGAAAAAACTGAGGCAGATAAGTTGGGGGATTCCAAAATTGGCACGCCTCTTTGGCGTAATGGACCTCCTGATAAACCAGTATTATGCAACGCATGTGGATCCCGATGGAGGACGAAGGGAACGCTTGTGAACTACACCCCTTTGCATGCTCGAGCTGATCCTGATGAATATGAAAATCACAGGGTTAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCCGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGACACAAGCAATAGATCCAGTTCTGGGTCAGCCATATCTAATCCTGAGAGCTGTGCTCATTTCAGCAGTGCTGATGCAAGTGACTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGGCCATGGTGCCTTCGAGAAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTCGAGAAACTAACTAAAGATCTATATGGTATTTTATGTGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCTGAGGAGGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCGAGCTCAATAGCTCGAGAAGAGGAGTCTGAGGCTAGCTCGGTTTCAGTTGATCACAAGCAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCTACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCACCATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGTACAAATTAAAAGGGACGACTCTCATCATGAAAGTGCACAAATTCTTGGAAGCCATAACTCGCCTTTATGCGACGTAGATATAAATGACATTATAAACTTCGGAGAGTTTGTGAAACAACTTACAAATGAAGAACAGCAGCAGTTAATGAAGTATCTACCACAGATCGATATTGCTGAGCTTCCGGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAGTTTAACTTCTTTCCAACAACTACTTAGGGAGGGTGTTTTCGACGCTTCCTTCCTTGGGACTATGATCGAAGATTGCACGACTCTGAAAAGGCTTGTACTATGTAACTCTTCGAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAACGTAAAAATGATGGCGAAGGATCTTTTCTTTCCAACGCCAACACGTCTGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGCGAGAGCTACAATCAAAATGTTCCTGGTAAACAGAAAATTCTTTAG 3219 44.73 MEARIVPESKGTVTSERGQFRGIRMDNPFTLKVGQIFTGFGVGCGVGIGVGRPINMAAARAFLHAINDLRSGRILEQNESLATIRTYETDIHIFSGAIPVMNEVMSATRGATDALSGVTRHLNNSLRKLGAKNIQGGIGCGVGFGHGFGVGLAIKPSFLQQVQSSVMQAMEKMVTKLGNNPNLAISQSAVPVSLQSAMSITNASANKHPVASIREFAKEMPETAPQNLLSSRSFETRTEKVIDSFLQNPVFKGGDTELQDEVGRLPLENRLFQMKLIQELKEENNKLHQILVEDLKIPPSRLQASNTGSRNRWSYDSHKNSRQISPAVQSHLQQVYLTLGCALVASAAGAYLHMLWNIGGVLTTLAGIGSIAWLMVTPPYEEKKRVSMLMAAALLQGASIGPLISVAIEIDPSVLVSAFVGTAVAFGCFSAAAMLARRREFLYLGGLLSSGISMLLWLRFASSIFGGSTAIFKFELEANPPPQGKETQRLGITAFVPNRSMASSVGGIWMDKVLEFGRRALFYVKVLSGYEERRIRSLRLELEKRLKKAEERKAAIRQIPEQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIDKEVEALMRVQLEGEERTMKNMVKVIQQQALLEKTEADKLGDSKIGTPLWRNGPPDKPVLCNACGSRWRTKGTLVNYTPLHARADPDEYENHRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWEAMVPSRKRTCVNRPKQSPVEKLTKDLYGILCEQRSSYFSEASEEDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDHKQYLVNEVYSPHSATVLVCSENKGMNFPPSRIGKMKNPSGSGVQQVQIKRDDSHHESAQILGSHNSPLCDVDINDIINFGEFVKQLTNEEQQQLMKYLPQIDIAELPETLKSMFDSPYFKESLTSFQQLLREGVFDASFLGTMIEDCTTLKRLVLCNSSKSKWVERYHQLKKRKNDGEGSFLSNANTSVSSNFMNVKRLRESYNQNVPGKQKIL 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9274355 9291777 + CmoCh02G016130.1 Cmo02g01613 377210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01613 1072 Coils Coil 565 588 - -
Cmo02g01613 1072 Pfam Asx homology domain 910 1007 IPR028020 -
Cmo02g01613 1072 Pfam GATA zinc finger 641 669 IPR000679 GO:0006355|GO:0043565
Cmo02g01613 1072 CDD BI-1 322 476 - -
Cmo02g01613 1072 Coils Coil 532 559 - -
Cmo02g01613 1072 Pfam Inhibitor of apoptosis-promoting Bax1 329 469 IPR006214 -
Cmo02g01613 1072 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 641 673 - -
Cmo02g01613 1072 PANTHER OSJNBB0038F03.10 PROTEIN 642 1070 IPR044589 -
Cmo02g01613 1072 CDD ZnF_GATA 643 679 IPR000679 GO:0006355|GO:0043565
Cmo02g01613 1072 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 922 1034 IPR044867 -
Cmo02g01613 1072 PANTHER GATA TRANSCRIPTION FACTOR 26 642 1070 - -
Cmo02g01613 1072 SMART GATA_3 638 683 IPR000679 GO:0006355|GO:0043565
Cmo02g01613 1072 Gene3D - 639 709 IPR013088 GO:0006355|GO:0008270
Cmo02g01613 1072 Gene3D - 916 1004 IPR038108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01613 - - - csv:101215311 748.429
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01613 Cmo-Chr2:9274355 Cmo19g00410 Cmo-Chr19:4799013 2.09E-102 dispersed
Cmo19g00408 Cmo-Chr19:4790234 Cmo02g01613 Cmo-Chr2:9274355 1.54E-65 transposed
Cmo19g00411 Cmo-Chr19:4810233 Cmo02g01613 Cmo-Chr2:9274355 4.20E-110 transposed
Cmo16g01159 Cmo-Chr16:8252858 Cmo02g01613 Cmo-Chr2:9274355 5.09E-172 wgd
Cmo19g00407 Cmo-Chr19:4775225 Cmo02g01613 Cmo-Chr2:9274355 0 wgd
Cmo02g01613 Cmo-Chr2:9274355 Cmo06g00835 Cmo-Chr6:4586921 9.57E-160 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00609 CCT,CST,ECH 78 342 C2C2-Gata Transcription Factor Family AT5G25830 54.3 1.5e-63 240.7
Cmo16g00703 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 51.4 2.0e-63 240.4
Cmo03g00730 . 98 281 C2C2-Gata Transcription Factor Family AT5G66320 50.5 7.8e-44 175.3
Cmo09g00615 CCT,ECH 34 289 C2C2-Gata Transcription Factor Family AT4G32890 50.6 1.5e-54 210.7
Cmo06g00835 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 8.0e-133 471.5
Cmo16g01159 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.4e-132 470.7
Cmo19g00407 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.3 3.0e-127 453.0
Cmo02g01613 . 643 1070 C2C2-Gata Transcription Factor Family AT4G17570 51.5 1.1e-110 397.9
Cmo06g00835 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 2.2e-113 406.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9316 PF01027 Bax1-I 1.10E-16 CL0453 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01613 Cmo_Chr02 FPKM 0.0 0.0 2.855426 1.529683 0.0 0.0 0.206147 3.002361 4.309201 3.805767