Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01613 ATGGAAGCTAGAATTGTCCCAGAAAGTAAGGGCACAGTGACCTCCGAGAGAGGGCAATTTCGAGGAATCCGAATGGACAATCCCTTTACTTTGAAGGTGGGTCAGATATTTACAGGGTTCGGCGTCGGTTGTGGCGTCGGTATCGGCGTTGGCCGACCCATAAACATGGCAGCTGCACGAGCCTTCCTACATGCCATAAATGACCTACGAAGCGGAAGAATCCTAGAACAAAATGAGAGTCTTGCTACTATACGAACGTATGAAACCGATATTCATATATTTTCAGGTGCAATACCTGTCATGAATGAAGTAATGAGTGCCACGAGAGGTGCAACCGACGCACTTTCTGGTGTAACCAGGCATTTAAACAACTCTCTCAGGAAATTAGGAGCTAAGAACATCCAAGGTGGCATTGGGTGTGGAGTTGGTTTTGGCCATGGTTTTGGCGTCGGCCTAGCTATCAAGCCTTCATTTCTACAACAAGTTCAATCTTCTGTTATGCAAGCAATGGAGAAGATGGTGACAAAATTAGGTAACAATCCTAATCTTGCAATTAGTCAAAGCGCTGTACCAGTATCACTGCAATCTGCCATGAGCATAACAAATGCTTCGGCTAACAAGCATCCTGTTGCAAGCATTAGAGAGTTTGCAAAAGAAATGCCAGAAACTGCCCCACAAAACCTATTGAGCAGCAGATCGTTTGAAACTCGAACCGAAAAGGTCATCGACAGTTTCTTGCAGAATCCTGTTTTTAAAGGAGGGGATACTGAACTGCAGGATGAGGTTGGACGCCTACCGCTCGAAAACCGTCTCTTTCAAATGAAACTAATTCAAGAGCTTAAGGAGGAGAATAACAAGCTTCACCAAATATTAGTGGAAGACCTGAAAATACCACCCAGCAGGCTCCAAGCAAGTAACACAGGATCCAGAAACCGTTGGAGCTATGATTCTCACAAGAATTCCCGCCAGATTTCGCCGGCCGTTCAATCTCATCTCCAGCAGGTTTACCTTACTCTAGGTTGTGCTTTAGTTGCATCTGCGGCTGGAGCTTATCTTCATATGCTTTGGAACATTGGCGGTGTTCTCACAACACTTGCTGGTATCGGAAGCATCGCATGGCTAATGGTCACTCCTCCATATGAAGAGAAAAAGAGGGTTTCTATGTTAATGGCGGCTGCTCTTCTTCAAGGAGCTTCAATTGGTCCTTTGATCAGTGTGGCTATTGAGATTGATCCGAGTGTTCTGGTCAGTGCATTTGTGGGAACGGCAGTGGCCTTTGGTTGCTTTTCAGCAGCAGCCATGTTAGCAAGGCGCAGAGAATTCCTTTATCTGGGTGGCCTGCTTTCATCTGGAATATCCATGTTACTCTGGCTGCGTTTTGCTTCCTCTATATTCGGTGGTTCCACTGCCATTTTCAAGTTTGAGCTCGAAGCAAACCCGCCCCCGCAAGGGAAAGAAACACAGCGTCTCGGCATCACTGCGTTCGTTCCAAATAGATCGATGGCTTCATCTGTTGGAGGGATTTGGATGGACAAGGTTTTAGAGTTTGGACGAAGAGCCCTCTTCTACGTTAAAGTCCTCTCCGGCTATGAAGAGCGGCGGATTCGATCGTTAAGGTTGGAGCTCGAAAAGCGTCTCAAGAAGGCAGAGGAAAGAAAAGCTGCAATAAGACAGATACCAGAACAGGCTATCTTAGGAGAAGTTCGTCGCATGGTCGAGGAGATGCAGACTCTAAATAAAAAGTTAGAGGAAACCGAGTCTGCCATTGAAGAGTACTTCAAACCAATCGACAAAGAAGTAGAGGCATTAATGAGAGTGCAACTTGAAGGAGAAGAGAGAACAATGAAGAACATGGTTAAAGTGATCCAGCAACAGGCTTTGTTAGAAAAAACTGAGGCAGATAAGTTGGGGGATTCCAAAATTGGCACGCCTCTTTGGCGTAATGGACCTCCTGATAAACCAGTATTATGCAACGCATGTGGATCCCGATGGAGGACGAAGGGAACGCTTGTGAACTACACCCCTTTGCATGCTCGAGCTGATCCTGATGAATATGAAAATCACAGGGTTAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCCGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGACACAAGCAATAGATCCAGTTCTGGGTCAGCCATATCTAATCCTGAGAGCTGTGCTCATTTCAGCAGTGCTGATGCAAGTGACTTGACAGGTCCAGCTCAGTCGATAGTGTGGGAGGCCATGGTGCCTTCGAGAAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTCGAGAAACTAACTAAAGATCTATATGGTATTTTATGTGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCTGAGGAGGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCGAGCTCAATAGCTCGAGAAGAGGAGTCTGAGGCTAGCTCGGTTTCAGTTGATCACAAGCAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCTACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATTTTCCACCATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGTACAAATTAAAAGGGACGACTCTCATCATGAAAGTGCACAAATTCTTGGAAGCCATAACTCGCCTTTATGCGACGTAGATATAAATGACATTATAAACTTCGGAGAGTTTGTGAAACAACTTACAAATGAAGAACAGCAGCAGTTAATGAAGTATCTACCACAGATCGATATTGCTGAGCTTCCGGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAGTTTAACTTCTTTCCAACAACTACTTAGGGAGGGTGTTTTCGACGCTTCCTTCCTTGGGACTATGATCGAAGATTGCACGACTCTGAAAAGGCTTGTACTATGTAACTCTTCGAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAACGTAAAAATGATGGCGAAGGATCTTTTCTTTCCAACGCCAACACGTCTGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCGCGAGAGCTACAATCAAAATGTTCCTGGTAAACAGAAAATTCTTTAG 3219 44.73 MEARIVPESKGTVTSERGQFRGIRMDNPFTLKVGQIFTGFGVGCGVGIGVGRPINMAAARAFLHAINDLRSGRILEQNESLATIRTYETDIHIFSGAIPVMNEVMSATRGATDALSGVTRHLNNSLRKLGAKNIQGGIGCGVGFGHGFGVGLAIKPSFLQQVQSSVMQAMEKMVTKLGNNPNLAISQSAVPVSLQSAMSITNASANKHPVASIREFAKEMPETAPQNLLSSRSFETRTEKVIDSFLQNPVFKGGDTELQDEVGRLPLENRLFQMKLIQELKEENNKLHQILVEDLKIPPSRLQASNTGSRNRWSYDSHKNSRQISPAVQSHLQQVYLTLGCALVASAAGAYLHMLWNIGGVLTTLAGIGSIAWLMVTPPYEEKKRVSMLMAAALLQGASIGPLISVAIEIDPSVLVSAFVGTAVAFGCFSAAAMLARRREFLYLGGLLSSGISMLLWLRFASSIFGGSTAIFKFELEANPPPQGKETQRLGITAFVPNRSMASSVGGIWMDKVLEFGRRALFYVKVLSGYEERRIRSLRLELEKRLKKAEERKAAIRQIPEQAILGEVRRMVEEMQTLNKKLEETESAIEEYFKPIDKEVEALMRVQLEGEERTMKNMVKVIQQQALLEKTEADKLGDSKIGTPLWRNGPPDKPVLCNACGSRWRTKGTLVNYTPLHARADPDEYENHRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWEAMVPSRKRTCVNRPKQSPVEKLTKDLYGILCEQRSSYFSEASEEDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDHKQYLVNEVYSPHSATVLVCSENKGMNFPPSRIGKMKNPSGSGVQQVQIKRDDSHHESAQILGSHNSPLCDVDINDIINFGEFVKQLTNEEQQQLMKYLPQIDIAELPETLKSMFDSPYFKESLTSFQQLLREGVFDASFLGTMIEDCTTLKRLVLCNSSKSKWVERYHQLKKRKNDGEGSFLSNANTSVSSNFMNVKRLRESYNQNVPGKQKIL 1072
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9274355 9291777 + CmoCh02G016130.1 Cmo02g01613 377210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01613 1072 Coils Coil 565 588 - -
Cmo02g01613 1072 Pfam Asx homology domain 910 1007 IPR028020 -
Cmo02g01613 1072 Pfam GATA zinc finger 641 669 IPR000679 GO:0006355|GO:0043565
Cmo02g01613 1072 CDD BI-1 322 476 - -
Cmo02g01613 1072 Coils Coil 532 559 - -
Cmo02g01613 1072 Pfam Inhibitor of apoptosis-promoting Bax1 329 469 IPR006214 -
Cmo02g01613 1072 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 641 673 - -
Cmo02g01613 1072 PANTHER OSJNBB0038F03.10 PROTEIN 642 1070 IPR044589 -
Cmo02g01613 1072 CDD ZnF_GATA 643 679 IPR000679 GO:0006355|GO:0043565
Cmo02g01613 1072 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 922 1034 IPR044867 -
Cmo02g01613 1072 PANTHER GATA TRANSCRIPTION FACTOR 26 642 1070 - -
Cmo02g01613 1072 SMART GATA_3 638 683 IPR000679 GO:0006355|GO:0043565
Cmo02g01613 1072 Gene3D - 639 709 IPR013088 GO:0006355|GO:0008270
Cmo02g01613 1072 Gene3D - 916 1004 IPR038108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01613 Cmo-Chr2:9274355 Cmo19g00410 Cmo-Chr19:4799013 2.09E-102 dispersed
Cmo19g00408 Cmo-Chr19:4790234 Cmo02g01613 Cmo-Chr2:9274355 1.54E-65 transposed
Cmo19g00411 Cmo-Chr19:4810233 Cmo02g01613 Cmo-Chr2:9274355 4.20E-110 transposed
Cmo16g01159 Cmo-Chr16:8252858 Cmo02g01613 Cmo-Chr2:9274355 5.09E-172 wgd
Cmo19g00407 Cmo-Chr19:4775225 Cmo02g01613 Cmo-Chr2:9274355 0 wgd
Cmo02g01613 Cmo-Chr2:9274355 Cmo06g00835 Cmo-Chr6:4586921 9.57E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9316 PF01027 Bax1-I 1.10E-16 CL0453 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01613 - - csv:101215311 748.429