Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01619 ATGGATTTCTCCGAGCAAGATGTAGATATATTCGGTGAAGAGTTGGAAAACGAAGGCAACAACGACAACGACAACGACAACCATGACCGTGATGCTGCTCGGTCCTCCTCTCAATCTTCGTCCTCTTCGTCTTCTTCGTCTTCTTCGGGTTCTTCATCGTCCAATGCTAGCGATGGAGGCGACAGTAGTAGTGGAGGTAGTGGGAGTGTGAGTAGTGCTGAAGAAGAAGACGAGGAAAAAGGCGAAGAAGTTCAGCAGAATCAAGATAGGGGGCATCTGGGGTATGAGGATAGAGATCTGTTTGGTTCTGATAATGAGGAATATTGTAAAACACTTGCTGCTAGTCCTTATCCTGTGCCAGTCTTACCTGCGGCAAGGAGTAATAACAACCATGCTAGAGGAACATTTGGGCGAGGTCGTTGGGGGAATGATAGAGGGTCAGGCCTCCTTCCACGGCCTGGACCATTTCCCCAAAGGCATGGTTTTGGTGGCTATGGATCGAAGTTTTCAAATGGGCGCCATGATGAACGCTTTGTCTCAGACATGAAGCTTACTAAAAGTGAAGAAACACTGGCGAGGAAGTGTATTGCTTTTCAGGAGCCTTGTGAACTTGCTTGCTATAGTCGTGTTGAAGGTGGAGATGTGTACTTTGATGATCGCAGCTTGAGACTGTTTAAGCGCTTCATTACTGAAGACATTGGAGCTGATTTGAACGAAGGTTTTGACACTTTTATTGAGAAGAAAGACTTAGGTTCTCAGGGTTTTGGTGACCTCCTTGCTTGCATTAGGGACAAAAACATTCCTCTTCAAAACATTCATTTTGTGACTTTCCGTAACAATCTTAACAAGATATTGGCTACTGCTTATATTCGTCACGAGCCTTGGGAAATGGGTGTGCATAAAAGAAATGGTGTTGTGTACCTTGATGTGCATAAATTACCAGAAAGACCACAAAGTGAATTGGAGCGTCGAAGGTGCTATTGGGGTTACTGTTTTGAGAGCCTTGCTACGGAGGACCCAAGAAGAGGTGATGGAGAAGGGATCCATCATGTAGATGCAAATGCTGAATATTGTGCTGTGATCAAAACCAAATTAGGTGCCCATCGCATCCTGATGGGTGCTGAAATGGATTGCTGTGATTCAACTGATGAGGGAAGGAGGTTTTATGTTGAACTAAAAACAAGTCGTGAGTTGGATCAGCGGACTGAAGAAAAATATGAGAGAGAGAAATTGCTTAAATTCTGGATACAATCATTCTTAGCTGGGGTACCATATATCATTATCGGATTCAGGAATGATGCTGGCCAACTAGTCCGCACAGAAAGATTGAGAACTAAAGACATAACACAGAGAGTGAAAATGAAGAACTATTGGCAGGGAGGAGTCTGTCTGGCCTTTGCTGATGAAGTGTTATGCTGGCTTTATGGAACAGTCAAAGAAAATGAAGATTACATACTGCAGTTTGCAAATCCTTTCACTCGTTTAGAGCTTCTTCAAGCCTCCTCGTGCCCGGACGCTATCACTCATCACATGGATCTATTGTACAATCATCTTTCTTTTCAAACTACAGTCGACCCTTATTGTGGTTTATTACACTTGTTATATGCTTCTTCGCCAATTAAAGTAAAGTTGAGACATGCCTGCCTGAGCTCTCAAGGAAAAAATGCAAAATATTGTATTACCTTACCTAACAGGTTTAACTACAACCCCGTAGGAGAGGGAAAAAAATGGAACCAAAAAGGAAGCAAGGAGCTCTATTTTGCAGAGCAATTCCTCTGCTTCTCGATCCTTTTTCTTCTTCTTCTTCTCCTCCTCCTCCGCTCGATTCCCTCTTTCTCCTCATGTTTTTCCCACAGATTTAGCCCCTTCTCCCCCTCTCTTTCCGCCCTACAACCGGCGGCGATGCACCGTGACCGAGGTGCGCTTGCCGGCGCTTCCAAGTTGGAGGTTACTCCTCTCGATCGGAAGCGTATCAACGAGGCTCTCGATAAGCAGCTCGAGCGATCCTCCCCCTCCACTTCTCGCGCGGTCCTTAACGGCAAGGATAAGCCCTCCGCGGCTCAGTCGGTGTTAATGGTGAAGCCGCCGTCTGATCAGAGAGACTCTCGCCCTTCGTCTCTATCTAAGACCAACTGTTCTGAAGAGTCTGAGACTGACAGTGAAGATTCAGATGTCAGTGGATCTGATGGTGATGATACATCTTGGATTTCGTGGTTTTGTAATCTGCGAGGAAATGAGTTCTTTTGTGAAGTGGATGATGACTATATACAAGACGACTTCAACCTTTGTGGGTTAAGCAGCCAAGTTCCATACTATGATTATGCTCTTGATTTGATTTTGGATGTTGAATCCTCTAATGGTGATATGTTTACAGAGGAACAGAATGAACTAATTGAATCTGCAGCTGAAATGCTTTATGGTCTAATTCATGCGAGATACATACTGACAAGTAAAGGCATGGCTGCTATGCTGGACAAGTTCAAGAATTATGACTTTGGGAGATGCCCTAGAGTTTACTGCTGTGGACAACCCTGTCTTCCTGTTGGTCAATCAGATATTCCTAGAGCAAGCACCGTCAAAATATACTGTCCAAGATGTGAGGATGTTTATTATCCTCGATCGAAATATCAAGGTAGTATCCTTTATTTGCATGATCATCTGTTCGACTACTTTCATGCACATTATACATTTCTTATCAATTTACTTCTTCCATCATCTGGTTTCTTTTTGTGA 2733 43.94 MDFSEQDVDIFGEELENEGNNDNDNDNHDRDAARSSSQSSSSSSSSSSSGSSSSNASDGGDSSSGGSGSVSSAEEEDEEKGEEVQQNQDRGHLGYEDRDLFGSDNEEYCKTLAASPYPVPVLPAARSNNNHARGTFGRGRWGNDRGSGLLPRPGPFPQRHGFGGYGSKFSNGRHDERFVSDMKLTKSEETLARKCIAFQEPCELACYSRVEGGDVYFDDRSLRLFKRFITEDIGADLNEGFDTFIEKKDLGSQGFGDLLACIRDKNIPLQNIHFVTFRNNLNKILATAYIRHEPWEMGVHKRNGVVYLDVHKLPERPQSELERRRCYWGYCFESLATEDPRRGDGEGIHHVDANAEYCAVIKTKLGAHRILMGAEMDCCDSTDEGRRFYVELKTSRELDQRTEEKYEREKLLKFWIQSFLAGVPYIIIGFRNDAGQLVRTERLRTKDITQRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFANPFTRLELLQASSCPDAITHHMDLLYNHLSFQTTVDPYCGLLHLLYASSPIKVKLRHACLSSQGKNAKYCITLPNRFNYNPVGEGKKWNQKGSKELYFAEQFLCFSILFLLLLLLLLRSIPSFSSCFSHRFSPFSPSLSALQPAAMHRDRGALAGASKLEVTPLDRKRINEALDKQLERSSPSTSRAVLNGKDKPSAAQSVLMVKPPSDQRDSRPSSLSKTNCSEESETDSEDSDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSNGDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKFKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPRCEDVYYPRSKYQGSILYLHDHLFDYFHAHYTFLINLLLPSSGFFL 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9328397 9338328 + CmoCh02G016190.1 Cmo02g01619 377216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01619 910 MobiDBLite consensus disorder prediction 83 101 - -
Cmo02g01619 910 MobiDBLite consensus disorder prediction 34 71 - -
Cmo02g01619 910 MobiDBLite consensus disorder prediction 1 20 - -
Cmo02g01619 910 PANTHER BNAC01G10220D PROTEIN 30 521 - -
Cmo02g01619 910 PRINTS Casein kinase II regulatory subunit family signature 734 750 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 PRINTS Casein kinase II regulatory subunit family signature 831 852 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 PRINTS Casein kinase II regulatory subunit family signature 853 874 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 PRINTS Casein kinase II regulatory subunit family signature 806 827 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 PRINTS Casein kinase II regulatory subunit family signature 751 765 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 MobiDBLite consensus disorder prediction 1 101 - -
Cmo02g01619 910 SUPERFAMILY Casein kinase II beta subunit 732 878 IPR035991 GO:0005956|GO:0019887
Cmo02g01619 910 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 727 831 IPR016149 GO:0005956|GO:0019887
Cmo02g01619 910 Pfam RAI1 like PD-(D/E)XK nuclease 376 437 IPR013961 -
Cmo02g01619 910 SMART CK_II_beta_2 734 892 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 Gene3D - 832 889 - -
Cmo02g01619 910 ProSitePatterns Casein kinase II regulatory subunit signature. 835 866 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 MobiDBLite consensus disorder prediction 124 144 - -
Cmo02g01619 910 MobiDBLite consensus disorder prediction 699 713 - -
Cmo02g01619 910 Pfam Casein kinase II regulatory subunit 734 878 IPR000704 GO:0005956|GO:0019887
Cmo02g01619 910 PANTHER DOM-3 RELATED 30 521 IPR039039 -
Cmo02g01619 910 MobiDBLite consensus disorder prediction 688 730 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01619 K14845 RAI1, DOM3Z; RAT1-interacting protein - csv:101211450 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01619 Cmo-Chr2:9328397 Cmo08g00978 Cmo-Chr8:6369038 9.78E-119 dispersed
Cmo19g00397 Cmo-Chr19:4605624 Cmo02g01619 Cmo-Chr2:9328397 3.47E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g568 . . . . . . . . . . Cma02g01577 . Car02g01341 . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00031 . . . . . . . . . . Cmo02g01619 . . . . . . . . . . . . . . . . . . . . . . Csa03g04670 . Cme04g00041
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008291 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 3 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01619 Cmo_Chr02 FPKM 0.0 0.0 0.168726 0.0 0.0 0.0 0.0 0.376506 0.436051 0.278733