Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01644 ATGATCACGATTGGATTAGCATCACTTCCAGCCGCTGAATTCGAGCTCAAACAAGCTACTCTCATGGCTGCCTTCACATTCACTCCCCGTATCGGTAGGCTCCCAACATCATCTCCCTCAATTCCCACTTCTTCCTCAAAACGCAAACTCAAATTCAACTCCGTTACCACCAGAGTCTCTCTTCAAGCTTCCCCGCCTTTACTCTCCGACCCCTTTGTAATTCAACTCGCCGAAACTCTCGAAGACTCGCTCCCTTCTTCTTCTTCTTCTTCTTCTTTTTCATCGCCTTTTTCTCTCCAAAAACTTAGGGAATCTTCGGCAGAGACTCTTCTCTCGACCCCATGGCCCTCTCGTAGAGACGAGCCCTTTCGTTTCACCGATGTTTCTTTAATAAAGCAGTCCCAAATCCACCCAATTTCGAATCCGCCGCAGTCTTCTGAGTTATCCAGCATTCCTGTAGAAACCCAATTCACCAATATTGTGATTGTAGATGGTCACTTGGTCAACTCGATTTCTAATTTGACGGAATTGCCGAATGGGGTATATGTGGGGAGTTTGACTGACCTCTCTTCGGACAGTGTTGGGAAGAGGGTATCTGAGTTTGTTGATGGGAAGTTCGTGGGGGACTTGTTTTGGTCCATTAATGGCGTTGGAGCTCCAGATTTGACGGTGGTTTATGTCCCTGCAGGGTGTAAGGTGGAGAATCCAATCCATTTGAGGTATTATTCGATTAGCGGGGGAGAGGAGGGGTCAAAGGAATTGGCTGTGTCGAATCCCAGGGTGTTGGTTTTGGTGGAAAATGGAGGTGAGATTGAGATAATTGAGGAGTTTTTGAGTGGGGGTGGGGGTGGTGGTCGGTACTATTGGGCGAATCCTGTTTTGGAGGTGGTGATTGGAAGTGGAGGAAAGGTTAAACATTCTTATATTCAGAATCAGTCTTTAGATGCTGCACATATCAAATGGACTTCTGTTCAGCAGGAATCGACCAGCGCGTACGAGCTTGTGGAGATTAGCACCGGTGGAAAATTAAGTAGACACAATGTCCATATCAAGCAACTGGGACCAGAGACCACAACAGAATTATCAACACTCCACTTATCAGTTGGCAATCAAACACAAGATCTACACAGTAGTCTAGTCCTCGACCATCCACGAGCATATTCTCGACAACTTCATAAATGTATTGTCGCGAATCCTCAAGGACAAGCTGTATTTGATGGTAATGTAAAAGTCAACAGGTACTTCTTTGTCCCTGTAGATTGGATTGTCTCAGCACAAGTTCATCATCGGTCATATCATTACACTCCTTGTAGTTCTTGGTCGCTTCATGATTAA 1335 45.62 MITIGLASLPAAEFELKQATLMAAFTFTPRIGRLPTSSPSIPTSSSKRKLKFNSVTTRVSLQASPPLLSDPFVIQLAETLEDSLPSSSSSSSFSSPFSLQKLRESSAETLLSTPWPSRRDEPFRFTDVSLIKQSQIHPISNPPQSSELSSIPVETQFTNIVIVDGHLVNSISNLTELPNGVYVGSLTDLSSDSVGKRVSEFVDGKFVGDLFWSINGVGAPDLTVVYVPAGCKVENPIHLRYYSISGGEEGSKELAVSNPRVLVLVENGGEIEIIEEFLSGGGGGGRYYWANPVLEVVIGSGGKVKHSYIQNQSLDAAHIKWTSVQQESTSAYELVEISTGGKLSRHNVHIKQLGPETTTELSTLHLSVGNQTQDLHSSLVLDHPRAYSRQLHKCIVANPQGQAVFDGNVKVNRYFFVPVDWIVSAQVHHRSYHYTPCSSWSLHD 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9474998 9477557 - CmoCh02G016440.1 Cmo02g01644 377241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01644 444 Pfam SufBD protein N-terminal region 98 239 IPR045595 -
Cmo02g01644 444 PANTHER PROTEIN ABCI7, CHLOROPLASTIC 43 414 IPR011542 GO:0016226
Cmo02g01644 444 Pfam SUF system FeS cluster assembly, SufBD 257 413 IPR000825 GO:0016226
Cmo02g01644 444 SUPERFAMILY Stabilizer of iron transporter SufD 91 413 IPR037284 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01644 K09015 sufD; Fe-S cluster assembly protein SufD - csv:101222108 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01644 Cmo-Chr2:9474998 Cmo19g00472 Cmo-Chr19:5642715 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g651 . . . . . . . Bma14g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00345 . . . Cmo02g01644 . . . . . . Cpe15g00352 . . . . . . . Cla09g01155 Cam09g1216 Cec09g1237 Cco09g1259 . . Cre09g1176 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005879 1 0 1 1 1 1 2 1 1 1 1 1 2 2 1 3 1 1 2 1 1 1 1 1 1 2 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01644 Cmo_Chr02 FPKM 0.816535 1.010845 64.588341 61.165089 222.215134 225.252518 216.83136 11.995091 11.668206 11.247694