Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01650 ATGCAAACGCCAGACGTTGTCGACGACGATGACTCGTGGGAAGTCAGGGCTTTCGCGGAGGACACGGCTGATGTCATGGGAACTACTTGGCCTCCTAGGTCATACACTTGCACTTTTTGTAGAAGAGAGTTCAGGTCTGCTCAAGCCCTAGGTGGTCATATGAATGTTCACCGTCGCGATCGTGCTCGGCTCCATCAAGCCCCGTCGAACGCAATCAAACCCTTTTCTTCCTCTTCTTCTTCTTCTTCTTCTACTTCGAATTCTTTCATTATCCCAGCTCATGATTTTAATGGTGGAGGGTTGTGTGTTCTCTACCCATTCCCAAACCCTTACAGCATTCGCTCACCCTCTTCTCTTTTCTCTATGTCCCATCATTCCTTCAACAACTTCATGCCCTCGACCTCGCCCGCCTCAGCCTTTCCGATTCGTAATCACCGTGCCGGAGCGAGTAGTTTCCCTCAATCCTTGAGTGATGAACAAGCCATGGAAAGTAGCAACCAAGAGGTTGATCTAGAGCTCAGGCTTGGACAAGCTCCTTCAACTCAAACTCTCATGGAAAAGGGACACAAAATCTCTAATTTTGAAGCTGCTTGTCTGAGGAAGAGATCATCAGATTGA 618 48.38 MQTPDVVDDDDSWEVRAFAEDTADVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQAPSNAIKPFSSSSSSSSSTSNSFIIPAHDFNGGGLCVLYPFPNPYSIRSPSSLFSMSHHSFNNFMPSTSPASAFPIRNHRAGASSFPQSLSDEQAMESSNQEVDLELRLGQAPSTQTLMEKGHKISNFEAACLRKRSSD 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9518170 9518787 - CmoCh02G016500.1 Cmo02g01650 377247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01650 205 SUPERFAMILY beta-beta-alpha zinc fingers 32 62 IPR036236 -
Cmo02g01650 205 SMART c2h2final6 35 57 IPR013087 -
Cmo02g01650 205 PANTHER OS07G0101800 PROTEIN 7 178 - -
Cmo02g01650 205 Pfam C2H2-type zinc finger 35 59 - -
Cmo02g01650 205 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Cmo02g01650 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Cmo02g01650 205 PANTHER OS07G0101800 PROTEIN 7 178 - -
Cmo02g01650 205 Gene3D Classic Zinc Finger 26 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01650 - - - cmo:103503534 250.366
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01650 Cmo06g00876 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01650 Cmo-Chr2:9518170 Cmo14g00118 Cmo-Chr14:529508 3.75E-27 dispersed
Cmo04g00199 Cmo-Chr4:982910 Cmo02g01650 Cmo-Chr2:9518170 1.71E-08 dispersed
Cmo19g00258 Cmo-Chr19:1886284 Cmo02g01650 Cmo-Chr2:9518170 4.62E-81 wgd
Cmo02g01650 Cmo-Chr2:9518170 Cmo06g00876 Cmo-Chr6:4987437 2.01E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013309 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9323 PF13912 zf-C2H2_6 4.00E-06 CL0361 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01650 Cmo_Chr02 FPKM 0.0 0.0 0.0 0.286384 0.0 0.0 0.0 0.0 0.295593 0.300084