Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01657 ATGACGGACTGCCGATTACCATCGGTCATGAATTTCTGGGCGGATGAGAACGCGTCGATGATGGACGCATTTATGAGCACCGATCTGAATTCCTTTTGGGTTACGCCGCCGCAGCCACAGCAACAGCAACAGCAACTTCCTCAGCAGCCGTATGCCTCTGTTTCTGCTGCGTCGGACCCGAGTAAAGGTGTCGGTCAATCGTTACCGCCGTCGTCTATGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGCCTCCAAGCTTTGATTGAAGGCGCTCAGGAGAGCTGGACTTACGCTATCTTCTGGCAGTCTTCGTATGACTGCTCCGGCGCCACCGTCTTGGGCTGGGGCGATGGGTACTACAAAGGCGAAGAAGATAAAGGCAAAGAAAAGGCCAAATCGAGTACCTCAAAATCAGAGCAGGAGTACCGTAAGAAAGTCCTTCGCGAGCTCAATTCTCTCATTTCTGGTTCACCTACCTCTGAAGACGACGCCGTCGACGAGGTTGTCACCGATACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCGTTCGTCTCCGGCGTCGGTTTACCGGGACAGGCGTTTTTCGACTCAAACCCTATTTGGGTTGCGGGTTCGGATCGGCTTGCGGGCTCGTTCTGTGAACGAGCCCGTCAGGGTCAGGTTTTCGGGTTGCAGACGGTGGTTTGTATTCCGTCGACGAATGGAGTCGTGGAATTGGGGTCGAGTGAGTTCATATGCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAATAATCTGGAGGTTGAAACCTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGACCCATCTTCGCTTTGGATCACTGAGCCATCAAACGCCATTGAAATTAGGGACCCTGCGACTGTGAGTAGTAACAACAACAACAACAACAACAACAATCCTGTGGCTTCCGCTCCAACTCCGACCACCACAAACAGCCAACCGGTTTCCAAAATTACATCACAGATTGAAACCCCCAAATCAAGCGTTGTTACTGAAACTCCAACCTCTGTTCCTCCTTCTCAAAATAGCCACCGACAGTCGCAGGCGGTTCAGACACAGAGCTTCTTTACCAGGGAATTGAACTTCTCTGAATTTGGGTACGATAATAGCAGCTTGAAGGATGGGAACTCACATTCTCTCAAGCCGGAATCCGGCGAGATTCTGAACTTCGGTGAGAGCAAGAGGAGTTCCTTTCCCAAAACAGATACCTTGCCTTCGGGCAGTTCCCAATTTGGAGCAGATGAGAATAAGAAGAGATCCCCTCCTTCACGTGGGAGTAACGAAGAGGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCATCCTCAGGCGCTTTGAAATCGGGTGGTGGCATTGGCGATTCCGATCACTCCGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGCGGTGGAGCCAGAGAAACGGCCTCGCAAACGTGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAGGCGGAGAGGCAGAGAAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGTGATGCTATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAGGATTTACAGAAGCAATTAGATTCAGTGAAGAAGTTGATGATGTCTAATAAAGATTCATGTATATCAACCTCAAATCAACCTCCGCCAGATGAAGACATTAAAGCATCAAACATCCATGGAAACCACAGTGGTATTGAAACCGATGTCGATGTGAAGATAATCAGTTGGGACGCAATGATCCGAATCCAATCGAGCAAGAAAAACCATCCAGCTGCACGGCTAATGGCAGCTTTAGAGGAACTGGACTTGGATATCAACCACGCTAGCATTTCAGTGGTTAATGATCTGATGATCCAACAAGCCACTGTCAAGATGAGCCGATTATACACTCAGGAGCAGCTAAGGTTAGCTATTTCGTCGAAATTAGGCGCACCTCGGTAG 2085 48.87 MTDCRLPSVMNFWADENASMMDAFMSTDLNSFWVTPPQPQQQQQQLPQQPYASVSAASDPSKGVGQSLPPSSMAVFNQETLQQRLQALIEGAQESWTYAIFWQSSYDCSGATVLGWGDGYYKGEEDKGKEKAKSSTSKSEQEYRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWVAGSDRLAGSFCERARQGQVFGLQTVVCIPSTNGVVELGSSEFICQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWITEPSNAIEIRDPATVSSNNNNNNNNNPVASAPTPTTTNSQPVSKITSQIETPKSSVVTETPTSVPPSQNSHRQSQAVQTQSFFTRELNFSEFGYDNSSLKDGNSHSLKPESGEILNFGESKRSSFPKTDTLPSGSSQFGADENKKRSPPSRGSNEEGMLSFTSGVILPSSGALKSGGGIGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSNKDSCISTSNQPPPDEDIKASNIHGNHSGIETDVDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRLAISSKLGAPR 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9546095 9548179 - CmoCh02G016570.1 Cmo02g01657 377254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01657 694 MobiDBLite consensus disorder prediction 300 367 - -
Cmo02g01657 694 MobiDBLite consensus disorder prediction 34 71 - -
Cmo02g01657 694 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 81 261 IPR025610 -
Cmo02g01657 694 MobiDBLite consensus disorder prediction 405 431 - -
Cmo02g01657 694 MobiDBLite consensus disorder prediction 124 143 - -
Cmo02g01657 694 MobiDBLite consensus disorder prediction 478 517 - -
Cmo02g01657 694 Coils Coil 553 580 - -
Cmo02g01657 694 Gene3D - 499 588 IPR036638 GO:0046983
Cmo02g01657 694 PANTHER MYC 12 690 IPR045084 GO:0003700|GO:0006355
Cmo02g01657 694 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 510 578 IPR036638 GO:0046983
Cmo02g01657 694 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 507 556 IPR011598 GO:0046983
Cmo02g01657 694 PANTHER TRANSCRIPTION FACTOR MYC2 12 690 - -
Cmo02g01657 694 SMART finulus 513 562 IPR011598 GO:0046983
Cmo02g01657 694 MobiDBLite consensus disorder prediction 405 446 - -
Cmo02g01657 694 CDD bHLH_AtAIB_like 504 579 - -
Cmo02g01657 694 MobiDBLite consensus disorder prediction 586 607 - -
Cmo02g01657 694 Pfam Helix-loop-helix DNA-binding domain 511 556 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01657 Cmo16g01208 CCT
Cmo02g01657 Cmo06g00657 CCT
Cmo02g01657 Cmo19g00251 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01657 Cmo-Chr2:9546095 Cmo06g00587 Cmo-Chr6:2882458 3.18E-11 dispersed
Cmo16g01208 Cmo-Chr16:8631197 Cmo02g01657 Cmo-Chr2:9546095 0 wgd
Cmo19g00251 Cmo-Chr19:1832010 Cmo02g01657 Cmo-Chr2:9546095 0 wgd
Cmo02g01657 Cmo-Chr2:9546095 Cmo06g00657 Cmo-Chr6:3318070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9324 PF14215 bHLH-MYC_N 6.60E-55 CL0161 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01657 K13422 - csv:101218165 1027.31