Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01657 | ATGACGGACTGCCGATTACCATCGGTCATGAATTTCTGGGCGGATGAGAACGCGTCGATGATGGACGCATTTATGAGCACCGATCTGAATTCCTTTTGGGTTACGCCGCCGCAGCCACAGCAACAGCAACAGCAACTTCCTCAGCAGCCGTATGCCTCTGTTTCTGCTGCGTCGGACCCGAGTAAAGGTGTCGGTCAATCGTTACCGCCGTCGTCTATGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGCCTCCAAGCTTTGATTGAAGGCGCTCAGGAGAGCTGGACTTACGCTATCTTCTGGCAGTCTTCGTATGACTGCTCCGGCGCCACCGTCTTGGGCTGGGGCGATGGGTACTACAAAGGCGAAGAAGATAAAGGCAAAGAAAAGGCCAAATCGAGTACCTCAAAATCAGAGCAGGAGTACCGTAAGAAAGTCCTTCGCGAGCTCAATTCTCTCATTTCTGGTTCACCTACCTCTGAAGACGACGCCGTCGACGAGGTTGTCACCGATACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCGTTCGTCTCCGGCGTCGGTTTACCGGGACAGGCGTTTTTCGACTCAAACCCTATTTGGGTTGCGGGTTCGGATCGGCTTGCGGGCTCGTTCTGTGAACGAGCCCGTCAGGGTCAGGTTTTCGGGTTGCAGACGGTGGTTTGTATTCCGTCGACGAATGGAGTCGTGGAATTGGGGTCGAGTGAGTTCATATGCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAATAATCTGGAGGTTGAAACCTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGACCCATCTTCGCTTTGGATCACTGAGCCATCAAACGCCATTGAAATTAGGGACCCTGCGACTGTGAGTAGTAACAACAACAACAACAACAACAACAATCCTGTGGCTTCCGCTCCAACTCCGACCACCACAAACAGCCAACCGGTTTCCAAAATTACATCACAGATTGAAACCCCCAAATCAAGCGTTGTTACTGAAACTCCAACCTCTGTTCCTCCTTCTCAAAATAGCCACCGACAGTCGCAGGCGGTTCAGACACAGAGCTTCTTTACCAGGGAATTGAACTTCTCTGAATTTGGGTACGATAATAGCAGCTTGAAGGATGGGAACTCACATTCTCTCAAGCCGGAATCCGGCGAGATTCTGAACTTCGGTGAGAGCAAGAGGAGTTCCTTTCCCAAAACAGATACCTTGCCTTCGGGCAGTTCCCAATTTGGAGCAGATGAGAATAAGAAGAGATCCCCTCCTTCACGTGGGAGTAACGAAGAGGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCATCCTCAGGCGCTTTGAAATCGGGTGGTGGCATTGGCGATTCCGATCACTCCGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGCGGTGGAGCCAGAGAAACGGCCTCGCAAACGTGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAGGCGGAGAGGCAGAGAAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGTGATGCTATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAGGATTTACAGAAGCAATTAGATTCAGTGAAGAAGTTGATGATGTCTAATAAAGATTCATGTATATCAACCTCAAATCAACCTCCGCCAGATGAAGACATTAAAGCATCAAACATCCATGGAAACCACAGTGGTATTGAAACCGATGTCGATGTGAAGATAATCAGTTGGGACGCAATGATCCGAATCCAATCGAGCAAGAAAAACCATCCAGCTGCACGGCTAATGGCAGCTTTAGAGGAACTGGACTTGGATATCAACCACGCTAGCATTTCAGTGGTTAATGATCTGATGATCCAACAAGCCACTGTCAAGATGAGCCGATTATACACTCAGGAGCAGCTAAGGTTAGCTATTTCGTCGAAATTAGGCGCACCTCGGTAG | 2085 | 48.87 | MTDCRLPSVMNFWADENASMMDAFMSTDLNSFWVTPPQPQQQQQQLPQQPYASVSAASDPSKGVGQSLPPSSMAVFNQETLQQRLQALIEGAQESWTYAIFWQSSYDCSGATVLGWGDGYYKGEEDKGKEKAKSSTSKSEQEYRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWVAGSDRLAGSFCERARQGQVFGLQTVVCIPSTNGVVELGSSEFICQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWITEPSNAIEIRDPATVSSNNNNNNNNNPVASAPTPTTTNSQPVSKITSQIETPKSSVVTETPTSVPPSQNSHRQSQAVQTQSFFTRELNFSEFGYDNSSLKDGNSHSLKPESGEILNFGESKRSSFPKTDTLPSGSSQFGADENKKRSPPSRGSNEEGMLSFTSGVILPSSGALKSGGGIGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSNKDSCISTSNQPPPDEDIKASNIHGNHSGIETDVDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRLAISSKLGAPR | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9546095 | 9548179 | - | CmoCh02G016570.1 | Cmo02g01657 | 377254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01657 | 694 | MobiDBLite | consensus disorder prediction | 300 | 367 | - | - | |
Cmo02g01657 | 694 | MobiDBLite | consensus disorder prediction | 34 | 71 | - | - | |
Cmo02g01657 | 694 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 81 | 261 | IPR025610 | - | |
Cmo02g01657 | 694 | MobiDBLite | consensus disorder prediction | 405 | 431 | - | - | |
Cmo02g01657 | 694 | MobiDBLite | consensus disorder prediction | 124 | 143 | - | - | |
Cmo02g01657 | 694 | MobiDBLite | consensus disorder prediction | 478 | 517 | - | - | |
Cmo02g01657 | 694 | Coils | Coil | 553 | 580 | - | - | |
Cmo02g01657 | 694 | Gene3D | - | 499 | 588 | IPR036638 | GO:0046983 | |
Cmo02g01657 | 694 | PANTHER | MYC | 12 | 690 | IPR045084 | GO:0003700|GO:0006355 | |
Cmo02g01657 | 694 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 510 | 578 | IPR036638 | GO:0046983 | |
Cmo02g01657 | 694 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 507 | 556 | IPR011598 | GO:0046983 | |
Cmo02g01657 | 694 | PANTHER | TRANSCRIPTION FACTOR MYC2 | 12 | 690 | - | - | |
Cmo02g01657 | 694 | SMART | finulus | 513 | 562 | IPR011598 | GO:0046983 | |
Cmo02g01657 | 694 | MobiDBLite | consensus disorder prediction | 405 | 446 | - | - | |
Cmo02g01657 | 694 | CDD | bHLH_AtAIB_like | 504 | 579 | - | - | |
Cmo02g01657 | 694 | MobiDBLite | consensus disorder prediction | 586 | 607 | - | - | |
Cmo02g01657 | 694 | Pfam | Helix-loop-helix DNA-binding domain | 511 | 556 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01657 | Cmo16g01208 | CCT | |
Cmo02g01657 | Cmo06g00657 | CCT | |
Cmo02g01657 | Cmo19g00251 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01657 | Cmo-Chr2:9546095 | Cmo06g00587 | Cmo-Chr6:2882458 | 3.18E-11 | dispersed | |
Cmo16g01208 | Cmo-Chr16:8631197 | Cmo02g01657 | Cmo-Chr2:9546095 | 0 | wgd | |
Cmo19g00251 | Cmo-Chr19:1832010 | Cmo02g01657 | Cmo-Chr2:9546095 | 0 | wgd | |
Cmo02g01657 | Cmo-Chr2:9546095 | Cmo06g00657 | Cmo-Chr6:3318070 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9324 | PF14215 | bHLH-MYC_N | 6.60E-55 | CL0161 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01657 | K13422 | - | csv:101218165 | 1027.31 |