Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01663 | ATGAGTATTGATGCTCTTTCCTCCAATGACCTGTTCAACTTAATCATCTACGACGCTATCTCTCCGACGCCGAACACTTCCCACGGCATCTGCGACTCGTCGGAGACTACTTTTTTCTCCGACGAAAAGGGTTTGAAGCATCAAGATAACCACCAACATGGCACGTTGGAACACCGGCCAAAACCCAATTTGGCGAGAAAACGCCACCCGAACGAGGCGGAAAGCAGCAACTGGGGAGCAGTCGGGTTGCAGCAAGGGAAGAAGAAAAGGAAGAGAAAACCAAAAGCTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGGCGTAAGCTGATGAGTGAGCATCTCTCAGTGTTGCGTTCCCTCATGCCTGAATCCTATGTCCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCAGTGGAGTTTGTGAAGGAATTGGAGCATGTTCTATCAACTCTTGAAGCCAAGAAGCTGCAAATTTTGCACCAAGAAATAGAAGAAAAACAAGAGAATTATAAGAATGAAGATTCAGTAAGGAGGAGGTTGTTTTCAGATAGTAACAGCTCTCAGTACTCAGCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCGAATCTCAGAATCCTTTCAATAAGAACGCATAGACAGCTGTTGAAGCTCATTGCTGGCTTGCAGGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACGGACTTTCATCCATTGGTTCTTTACTCTATTAGTCTTAAGGTGGAAGAAGGGTGCCAACTGAGATCAGTGGATGACATAGCAGCGGCAGCACATGAAATGGTTAGAATAATTGAGGAAGAAGGGGTTTTGTGTTAA | 897 | 44.7 | MSIDALSSNDLFNLIIYDAISPTPNTSHGICDSSETTFFSDEKGLKHQDNHQHGTLEHRPKPNLARKRHPNEAESSNWGAVGLQQGKKKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRRLFSDSNSSQYSAKSKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHEMVRIIEEEGVLC | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9566081 | 9567892 | - | CmoCh02G016630.1 | Cmo02g01663 | 377260 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01663 | 298 | PANTHER | MAX DIMERIZATION, MAD | 1 | 296 | - | - | |
Cmo02g01663 | 298 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 105 | 156 | IPR011598 | GO:0046983 | |
Cmo02g01663 | 298 | PANTHER | TRANSCRIPTION FACTOR BHLH71 | 1 | 296 | - | - | |
Cmo02g01663 | 298 | Coils | Coil | 165 | 188 | - | - | |
Cmo02g01663 | 298 | Pfam | Helix-loop-helix DNA-binding domain | 106 | 157 | IPR011598 | GO:0046983 | |
Cmo02g01663 | 298 | MobiDBLite | consensus disorder prediction | 45 | 107 | - | - | |
Cmo02g01663 | 298 | Gene3D | - | 96 | 184 | IPR036638 | GO:0046983 | |
Cmo02g01663 | 298 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 105 | 174 | IPR036638 | GO:0046983 | |
Cmo02g01663 | 298 | MobiDBLite | consensus disorder prediction | 45 | 73 | - | - | |
Cmo02g01663 | 298 | SMART | finulus | 111 | 162 | IPR011598 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01663 | Cmo19g00245 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01663 | Cmo-Chr2:9566081 | Cmo05g00543 | Cmo-Chr5:2622030 | 1.11E-67 | dispersed | |
Cmo19g00245 | Cmo-Chr19:1723747 | Cmo02g01663 | Cmo-Chr2:9566081 | 1.03E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9326 | PF00010 | HLH | 2.50E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01663 | - | - | cmax:111466851 | 377.867 |