Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01663 ATGAGTATTGATGCTCTTTCCTCCAATGACCTGTTCAACTTAATCATCTACGACGCTATCTCTCCGACGCCGAACACTTCCCACGGCATCTGCGACTCGTCGGAGACTACTTTTTTCTCCGACGAAAAGGGTTTGAAGCATCAAGATAACCACCAACATGGCACGTTGGAACACCGGCCAAAACCCAATTTGGCGAGAAAACGCCACCCGAACGAGGCGGAAAGCAGCAACTGGGGAGCAGTCGGGTTGCAGCAAGGGAAGAAGAAAAGGAAGAGAAAACCAAAAGCTTGTAAGAACAAAGAAGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGGCGTAAGCTGATGAGTGAGCATCTCTCAGTGTTGCGTTCCCTCATGCCTGAATCCTATGTCCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCAGTGGAGTTTGTGAAGGAATTGGAGCATGTTCTATCAACTCTTGAAGCCAAGAAGCTGCAAATTTTGCACCAAGAAATAGAAGAAAAACAAGAGAATTATAAGAATGAAGATTCAGTAAGGAGGAGGTTGTTTTCAGATAGTAACAGCTCTCAGTACTCAGCCAAATCCAAGGCTTCTTCAGCTGACATTGAAGTCACTTTGATTGAAACTCATGCGAATCTCAGAATCCTTTCAATAAGAACGCATAGACAGCTGTTGAAGCTCATTGCTGGCTTGCAGGCTCTTCGTCTCACTATTCTTCATCTCAATGTCACGGACTTTCATCCATTGGTTCTTTACTCTATTAGTCTTAAGGTGGAAGAAGGGTGCCAACTGAGATCAGTGGATGACATAGCAGCGGCAGCACATGAAATGGTTAGAATAATTGAGGAAGAAGGGGTTTTGTGTTAA 897 44.7 MSIDALSSNDLFNLIIYDAISPTPNTSHGICDSSETTFFSDEKGLKHQDNHQHGTLEHRPKPNLARKRHPNEAESSNWGAVGLQQGKKKRKRKPKACKNKEEAETQRMTHIAVERNRRKLMSEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHVLSTLEAKKLQILHQEIEEKQENYKNEDSVRRRLFSDSNSSQYSAKSKASSADIEVTLIETHANLRILSIRTHRQLLKLIAGLQALRLTILHLNVTDFHPLVLYSISLKVEEGCQLRSVDDIAAAAHEMVRIIEEEGVLC 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9566081 9567892 - CmoCh02G016630.1 Cmo02g01663 377260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01663 298 PANTHER MAX DIMERIZATION, MAD 1 296 - -
Cmo02g01663 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Cmo02g01663 298 PANTHER TRANSCRIPTION FACTOR BHLH71 1 296 - -
Cmo02g01663 298 Coils Coil 165 188 - -
Cmo02g01663 298 Pfam Helix-loop-helix DNA-binding domain 106 157 IPR011598 GO:0046983
Cmo02g01663 298 MobiDBLite consensus disorder prediction 45 107 - -
Cmo02g01663 298 Gene3D - 96 184 IPR036638 GO:0046983
Cmo02g01663 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 174 IPR036638 GO:0046983
Cmo02g01663 298 MobiDBLite consensus disorder prediction 45 73 - -
Cmo02g01663 298 SMART finulus 111 162 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01663 Cmo19g00245 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01663 Cmo-Chr2:9566081 Cmo05g00543 Cmo-Chr5:2622030 1.11E-67 dispersed
Cmo19g00245 Cmo-Chr19:1723747 Cmo02g01663 Cmo-Chr2:9566081 1.03E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9326 PF00010 HLH 2.50E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01663 - - cmax:111466851 377.867