Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01673 ATGTATGGGGATTGCCAAGTGATGTCGAGCAATATGGGAGCAAACATGGCTTCCTCTGAATCTCTCTTCTCTTCTCCCATTCAAAACCCTAATTTCAACTTCATTTCCAATTTCCACCACTTCCCTTCCATTGTTCCTAAGGAAGAAAATGGGTTGATTATGAGAGGAAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAACAGCTTGTTGAAGAAAACCCAGGAATTGAAATGGAAAGTAATGATAATATTATGCAAAATCAGAAGAAAAAACGCTATCATAGGCATACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTTAAGGAATGTCCACACCCAGATGACAAGCAGCGCCTCAAACTCAGCCAAGAACTCGGCCTCAAACCTCGCCAAGTCAAGTTTTGGTTCCAAAATCGAAGAACCCAAATGAAGGCACAACAAGACAGATCTGATAATGTGATACTTAGGTCTGAAAATGATACCTTAAAGAATGAGAATTATAGACTGCAAACTGCCTTGAGAAACATTATATGCCCTAGCTGTGGAGGGCAAGGTATCCTTGGAGAGCCAAGCTTGGATGAACAGCAGCTTCGCCTTGAGAATGCTAGACTTAGAGAACAGTTGGAACAAGTTTGCTCCTTCACCTCAAGATACACTGGTCGCCCACTCCAAGGGATGTCCTCCACAGCTCCCCCTCTTATGCAACCATCTCTTGATTTGGACATGAACATATACTCAAGGCAATACACAGAGGCCATGGTATCGTCCTCCGAAATGATGCCACTGGCGTCGATGCTCCCGCCCGACGCCGCTCACTTCCCAGAAGGCGGTCTATTAATCGAGGAGGAAAAAACATTAGCTATGGATCTTGCTATATCGTCCATGGCTGAACTCGTGAAGATGTGCCGCTTAACCGAGCCGCTTTGGATTCGAAACAGCGAGAGCGGTAAGGAAGTTCTAAATGTAGAAGAACATGCCAGGATGTTTCCATGGCCAATGAACCTCAAACAACACTTGATGAATGAGTTTAGAACCGAAGCCACTCGTGATAGCGCCGTTGTTATAATGAACAGCATCACCCTCGTCGACGCCTTTCTCGACGCGAACAAATGGATGGAGTTATTCCCTTCACTCGTGGCCAAAGCAAAAACTGTGCAAATCATTTCATCAAGTGTTTCAGGCCATGCGAGCGGCTCCCTTCGATTGATGTATGCAGAACTTCAAGCTCTTTCTCCATTAATTCCGACGAGGGAAGCCCATTTCCTCCGGTGCTGCCAGCAAAACGCCGATGAAGGCAGCTGGGCAATTGTTGATCTTCCGATCGACAGCTTTCACGACAGCCTCCAGCATTCGTTCCCCAGATACAGGAGAAGGCCGTCCGGCTGCATTATCCAAGACATGCCCAACGGATATTCGAGGGTTACATGGGTGGAGCACGCGGAGATAGAAGAGAAGCCAATCCATCAAATATTCAATAATTTTGTTCATAGTGGAATGGCTTTTGGGGCGCATCGCTGGTTGGCTATTTTACAAAGGCAATGCGAGAGAATTGCAAGCCTCATGGCTCGAAACATTTCTGATCTTGGAGTGATACCTTCGCCAGAAGCAAGACAGAACTTAATGAAATTGGCACAAAGAATGACCAGAACTTTCTCACTTAACATAAGCACCTCCGGTGGCCAGTCGTGGACCGCGTTGTCCGATTCTCCTGATGATACTGTTCGTATAACGACTCAAAAAATTGTCGAGCCTGGCCAACCTAATGGGGTTATTCTTAGTGCTGTCTCCACCACTTGGCTTCCCTATCCTCATTACCGCGTCTTCGATCTTCTTCGAGATGAACGACAACGATCCCAGCTGGAGGTTCTTTCCAATGGGAATTCACTGCACGAGGTTGCTCACATTGCTAATGGCTCCCACCCTGGAAACTGCATATCTCTGCTTCGTATCAATGTGGCCAGCAATTTCTCCCAGCATGTTGAGCTGATGCTGCAGGAGAGCTGCACGGACCAGTCCGGCAGCCTCGTCGTCTTCGCTACGATCGACGTCGATTCGATTCAGTTAGCCATGAGTGGAGAAGACTCCTCCAGCATTCCCCTCCTCCCCATAGGATTTTCCATCGTCCCCGTTGTCGATTCGACTGCCGATGGACGCCTAGCATCATCGCCACCCAAGGACGGTGCTACTAATGCTGCAGTTGTCAACTCCGGCTGCTTACTTACCGTCGGCCTGCAAGTTCTAGCCAGCACCATTCCATCGGCCAAGCTCAACCTGTCTAGTGTAACCGCCATCAACAACCAGCTCTGTAACACGCTCCACCAAATTAACGCTGCTCTTGGCTGCAGCTCAACTCAGCTCGAGAATGCCAATGCCGCTGTCGACCAGAATACTGCACTGCCGCTGCCGACACAACCGCCACCCAAGCAATAA 2433 48.25 MYGDCQVMSSNMGANMASSESLFSSPIQNPNFNFISNFHHFPSIVPKEENGLIMRGKEDMESGSGSEQLVEENPGIEMESNDNIMQNQKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRSENDTLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLREQLEQVCSFTSRYTGRPLQGMSSTAPPLMQPSLDLDMNIYSRQYTEAMVSSSEMMPLASMLPPDAAHFPEGGLLIEEEKTLAMDLAISSMAELVKMCRLTEPLWIRNSESGKEVLNVEEHARMFPWPMNLKQHLMNEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSLVAKAKTVQIISSSVSGHASGSLRLMYAELQALSPLIPTREAHFLRCCQQNADEGSWAIVDLPIDSFHDSLQHSFPRYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPIHQIFNNFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMTRTFSLNISTSGGQSWTALSDSPDDTVRITTQKIVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERQRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNFSQHVELMLQESCTDQSGSLVVFATIDVDSIQLAMSGEDSSSIPLLPIGFSIVPVVDSTADGRLASSPPKDGATNAAVVNSGCLLTVGLQVLASTIPSAKLNLSSVTAINNQLCNTLHQINAALGCSSTQLENANAAVDQNTALPLPTQPPPKQ 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9599233 9604803 + CmoCh02G016730.1 Cmo02g01673 377270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01673 810 Gene3D - 76 158 - -
Cmo02g01673 810 SUPERFAMILY Homeodomain-like 78 148 IPR009057 -
Cmo02g01673 810 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Cmo02g01673 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 81 787 IPR042160 -
Cmo02g01673 810 SUPERFAMILY Bet v1-like 283 519 - -
Cmo02g01673 810 SMART START_1 290 517 IPR002913 GO:0008289
Cmo02g01673 810 Pfam START domain 291 517 IPR002913 GO:0008289
Cmo02g01673 810 CDD homeodomain 90 148 IPR001356 GO:0003677
Cmo02g01673 810 ProSiteProfiles START domain profile. 281 520 IPR002913 GO:0008289
Cmo02g01673 810 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Cmo02g01673 810 CDD START_ArGLABRA2_like 285 516 - -
Cmo02g01673 810 SMART HOX_1 88 151 IPR001356 GO:0003677
Cmo02g01673 810 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Cmo02g01673 810 PANTHER - 81 787 - -
Cmo02g01673 810 SUPERFAMILY Bet v1-like 554 776 - -
Cmo02g01673 810 Gene3D - 316 515 IPR023393 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01673 Cmo-Chr2:9599233 Cmo13g01146 Cmo-Chr13:9265340 0 dispersed
Cmo19g00233 Cmo-Chr19:1625115 Cmo02g01673 Cmo-Chr2:9599233 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9329 PF01852 START 1.10E-41 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01673 - - csv:101212772 1421.37