Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01676 ATGGAGCTATTCCCTGCACAGCCGGATTTGTCGCTCCAAATTAGCCCTCCCAATACAAATAAACCCTCTTCCACTTGGAGAACAACAACACCCTCTCAAGAACATCTTGATTTGGGGTTTTGGAATAATCTCAATTTGGAGTCTGCTAAACCCACTCCCAAACATCACCCTACTAATCAACACTTTGATCTCTCCCTTTCCAACTTCACTCAAATTAACCAATACTCCAATATTCCTCCTCCTCCGCCTCCTCCTCTTCCTCACCACCACCACCACCCTGCCTTCCACGGCGGCGCTCACCTCTTCCAAACCCTACACAAAACCCATCACCCACCCACCATTTTCCACCACACTCCTCCGCCACCACCCACCACATCGCACCCTTTTCCAGGACAGAACAATGTTCAAGACTTGGCCTTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCACTCCCTCCCCCATCGCTCCCTCCGCCAGCGGCCACGGCCAGATAATGATGCGATCCAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGCGATGGACTTCCACTCTCCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGCGGCCATGAAAGAGCGACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGGTATGCAACTCATAA 738 51.08 MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQHFDLSLSNFTQINQYSNIPPPPPPPLPHHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPPPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSPIAPSASGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQVCNS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9621080 9621909 + CmoCh02G016760.1 Cmo02g01676 377273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01676 245 SUPERFAMILY Homeodomain-like 189 242 IPR009057 -
Cmo02g01676 245 MobiDBLite consensus disorder prediction 1 31 - -
Cmo02g01676 245 MobiDBLite consensus disorder prediction 11 31 - -
Cmo02g01676 245 MobiDBLite consensus disorder prediction 72 96 - -
Cmo02g01676 245 MobiDBLite consensus disorder prediction 114 128 - -
Cmo02g01676 245 Gene3D - 191 245 - -
Cmo02g01676 245 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 242 - -
Cmo02g01676 245 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 192 242 IPR006447 GO:0003677
Cmo02g01676 245 MobiDBLite consensus disorder prediction 110 134 - -
Cmo02g01676 245 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 242 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01676 Cmo06g00638 CCT
Cmo02g01676 Cmo19g00231 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01676 Cmo-Chr2:9621080 Cmo14g00893 Cmo-Chr14:4741964 3.11E-36 dispersed
Cmo16g01233 Cmo-Chr16:8835530 Cmo02g01676 Cmo-Chr2:9621080 2.77E-54 wgd
Cmo19g00231 Cmo-Chr19:1590103 Cmo02g01676 Cmo-Chr2:9621080 4.18E-82 wgd
Cmo02g01676 Cmo-Chr2:9621080 Cmo06g00638 Cmo-Chr6:3197778 1.69E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9331 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01676 - - bhj:120077162 305.449