Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01685 | ATGGGTGGCAGTGAGATAAATAAATCAGCGAAGGAGGAATCCAAGTCTGCGCCTGCCACTACACAGGAAGAGTCTCCAAACACAAGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGCCAACAAGCCCCCAGGCACACCCATATATGTGGGGGGTACAGCCCATTATGCCCCCTTATGGTACCCCTCCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATCTATGCTCATCCACCTATTCCTCCGGGATCATATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGAATTGCTGAGGCTTCTGGGAATACACCAGGCAACATGGAAGGGGATGGTAAGCCCTCTGAGCTGAAAGAAAAGTTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAACATGATCACTGGGAAGAACAACGAGCTTGGTAAACCATCAGGAGCATCTGCTAATGGAGTTTATTCTAAAAGCGCTGAAAGTGAAAGTGAAGGTTCAAGCGAAAGAAGTGATGCTGACTCTCAAAATGATTCACAACTAAAATCTGGATCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTCGCTCATCCATTGGTGAACCAAACAATGTCCATAATACCAATTCAAGCTTCTGGAGCTGTTTCAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACTCCTACAACTTCTGCCGTCCCTTCATTGGGTGGGAAGGTCCCTTCCGCTCCGGTTGTGGGAGCTGCTGCTGCTGGGTCACGGGACAGCATTCAGTCACAGATGTGGTTACAGGATGAAAGAGAGCTAAAAAGGCAAAAAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGGTCTCGGTTGCGTAAACAGGCTGAATGTGACGAGCTTTCTCATCGTGCCGAAGCTTTGAACGAGGAAAATGCGAGTCTTAGGTCCGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCTTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAAAGAAGATCCAAGAGCCACCAAAGATGACCAAAATGTGAATAAAGAACCTCAGCGTACATCCCGGACCGAGTTCACCAAGGGGTAG | 1206 | 46.35 | MGGSEINKSAKEESKSAPATTQEESPNTSTGIVNPEWSGFQAYSPIPPPGYLPTSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAIASPNGIAEASGNTPGNMEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKPSGASANGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVSGPATNLNIGMDYWGTPTTSAVPSLGGKVPSAPVVGAAAAGSRDSIQSQMWLQDERELKRQKRKQSNRESARRSRLRKQAECDELSHRAEALNEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGKEDPRATKDDQNVNKEPQRTSRTEFTKG | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9670417 | 9679311 | - | CmoCh02G016850.1 | Cmo02g01685 | 377282 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01685 | 401 | MobiDBLite | consensus disorder prediction | 113 | 223 | - | - | |
Cmo02g01685 | 401 | Pfam | Disordered region downstream of MFMR | 134 | 267 | - | - | |
Cmo02g01685 | 401 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 306 | 321 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo02g01685 | 401 | MobiDBLite | consensus disorder prediction | 13 | 37 | - | - | |
Cmo02g01685 | 401 | Pfam | G-box binding protein MFMR | 1 | 95 | IPR012900 | - | |
Cmo02g01685 | 401 | PANTHER | BZIP TRANSCRIPTION FACTOR 16-LIKE | 1 | 401 | - | - | |
Cmo02g01685 | 401 | CDD | bZIP_plant_GBF1 | 304 | 354 | IPR045314 | GO:0003700|GO:0006355 | |
Cmo02g01685 | 401 | Coils | Coil | 319 | 367 | - | - | |
Cmo02g01685 | 401 | MobiDBLite | consensus disorder prediction | 358 | 401 | - | - | |
Cmo02g01685 | 401 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 401 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo02g01685 | 401 | MobiDBLite | consensus disorder prediction | 284 | 326 | - | - | |
Cmo02g01685 | 401 | SMART | brlzneu | 299 | 363 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo02g01685 | 401 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Cmo02g01685 | 401 | Pfam | bZIP transcription factor | 299 | 361 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo02g01685 | 401 | Gene3D | - | 302 | 356 | - | - | |
Cmo02g01685 | 401 | MobiDBLite | consensus disorder prediction | 365 | 401 | - | - | |
Cmo02g01685 | 401 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 301 | 364 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo02g01685 | 401 | MobiDBLite | consensus disorder prediction | 145 | 176 | - | - | |
Cmo02g01685 | 401 | SUPERFAMILY | Leucine zipper domain | 302 | 358 | IPR046347 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01685 | Cmo16g01240 | CCT | |
Cmo02g01685 | Cmo06g00633 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01685 | Cmo-Chr2:9670417 | Cmo03g00796 | Cmo-Chr3:6493621 | 2.36E-60 | dispersed | |
Cmo16g01240 | Cmo-Chr16:8879499 | Cmo02g01685 | Cmo-Chr2:9670417 | 6.11E-177 | wgd | |
Cmo02g01685 | Cmo-Chr2:9670417 | Cmo06g00633 | Cmo-Chr6:3138763 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9332 | PF16596 | MFMR_assoc | 1.60E-48 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01685 | K09060 | - | csv:101214217 | 706.057 |