Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01685 ATGGGTGGCAGTGAGATAAATAAATCAGCGAAGGAGGAATCCAAGTCTGCGCCTGCCACTACACAGGAAGAGTCTCCAAACACAAGCACTGGCATTGTTAATCCTGAATGGTCAGGATTTCAGGCATATTCTCCAATACCTCCACCTGGATATTTGCCAACAAGCCCCCAGGCACACCCATATATGTGGGGGGTACAGCCCATTATGCCCCCTTATGGTACCCCTCCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATCTATGCTCATCCACCTATTCCTCCGGGATCATATCCTTACAGTCCTTTTGCTATAGCTTCTCCAAATGGAATTGCTGAGGCTTCTGGGAATACACCAGGCAACATGGAAGGGGATGGTAAGCCCTCTGAGCTGAAAGAAAAGTTGCCAATTAAAAGATCGAAAGGAAGTCTGGGAAGTTTAAACATGATCACTGGGAAGAACAACGAGCTTGGTAAACCATCAGGAGCATCTGCTAATGGAGTTTATTCTAAAAGCGCTGAAAGTGAAAGTGAAGGTTCAAGCGAAAGAAGTGATGCTGACTCTCAAAATGATTCACAACTAAAATCTGGATCTGGGAAAGATTCTTTAGAAGGTGGAGGGACTCCTAATGGTTTAATGCATGGTTCTCAGAATGAAGGACATAGTCTCGCTCATCCATTGGTGAACCAAACAATGTCCATAATACCAATTCAAGCTTCTGGAGCTGTTTCAGGTCCTGCTACAAATTTGAATATAGGAATGGATTATTGGGGTACTCCTACAACTTCTGCCGTCCCTTCATTGGGTGGGAAGGTCCCTTCCGCTCCGGTTGTGGGAGCTGCTGCTGCTGGGTCACGGGACAGCATTCAGTCACAGATGTGGTTACAGGATGAAAGAGAGCTAAAAAGGCAAAAAAGGAAGCAGTCAAACAGAGAATCTGCTCGTAGGTCTCGGTTGCGTAAACAGGCTGAATGTGACGAGCTTTCTCATCGTGCCGAAGCTTTGAACGAGGAAAATGCGAGTCTTAGGTCCGAAGTGGATAGGATTAGGAGTGAGTACGAGCAACTTCTTTCAGAGAATGCTTCTCTCAAGAGGAGGCTTGGAGAAAGTGATGGAAAAGAAGATCCAAGAGCCACCAAAGATGACCAAAATGTGAATAAAGAACCTCAGCGTACATCCCGGACCGAGTTCACCAAGGGGTAG 1206 46.35 MGGSEINKSAKEESKSAPATTQEESPNTSTGIVNPEWSGFQAYSPIPPPGYLPTSPQAHPYMWGVQPIMPPYGTPPHPYVAMYPHGGIYAHPPIPPGSYPYSPFAIASPNGIAEASGNTPGNMEGDGKPSELKEKLPIKRSKGSLGSLNMITGKNNELGKPSGASANGVYSKSAESESEGSSERSDADSQNDSQLKSGSGKDSLEGGGTPNGLMHGSQNEGHSLAHPLVNQTMSIIPIQASGAVSGPATNLNIGMDYWGTPTTSAVPSLGGKVPSAPVVGAAAAGSRDSIQSQMWLQDERELKRQKRKQSNRESARRSRLRKQAECDELSHRAEALNEENASLRSEVDRIRSEYEQLLSENASLKRRLGESDGKEDPRATKDDQNVNKEPQRTSRTEFTKG 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9670417 9679311 - CmoCh02G016850.1 Cmo02g01685 377282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01685 401 MobiDBLite consensus disorder prediction 113 223 - -
Cmo02g01685 401 Pfam Disordered region downstream of MFMR 134 267 - -
Cmo02g01685 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 306 321 IPR004827 GO:0003700|GO:0006355
Cmo02g01685 401 MobiDBLite consensus disorder prediction 13 37 - -
Cmo02g01685 401 Pfam G-box binding protein MFMR 1 95 IPR012900 -
Cmo02g01685 401 PANTHER BZIP TRANSCRIPTION FACTOR 16-LIKE 1 401 - -
Cmo02g01685 401 CDD bZIP_plant_GBF1 304 354 IPR045314 GO:0003700|GO:0006355
Cmo02g01685 401 Coils Coil 319 367 - -
Cmo02g01685 401 MobiDBLite consensus disorder prediction 358 401 - -
Cmo02g01685 401 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 401 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cmo02g01685 401 MobiDBLite consensus disorder prediction 284 326 - -
Cmo02g01685 401 SMART brlzneu 299 363 IPR004827 GO:0003700|GO:0006355
Cmo02g01685 401 MobiDBLite consensus disorder prediction 1 50 - -
Cmo02g01685 401 Pfam bZIP transcription factor 299 361 IPR004827 GO:0003700|GO:0006355
Cmo02g01685 401 Gene3D - 302 356 - -
Cmo02g01685 401 MobiDBLite consensus disorder prediction 365 401 - -
Cmo02g01685 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 301 364 IPR004827 GO:0003700|GO:0006355
Cmo02g01685 401 MobiDBLite consensus disorder prediction 145 176 - -
Cmo02g01685 401 SUPERFAMILY Leucine zipper domain 302 358 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01685 Cmo16g01240 CCT
Cmo02g01685 Cmo06g00633 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01685 Cmo-Chr2:9670417 Cmo03g00796 Cmo-Chr3:6493621 2.36E-60 dispersed
Cmo16g01240 Cmo-Chr16:8879499 Cmo02g01685 Cmo-Chr2:9670417 6.11E-177 wgd
Cmo02g01685 Cmo-Chr2:9670417 Cmo06g00633 Cmo-Chr6:3138763 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9332 PF16596 MFMR_assoc 1.60E-48 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01685 K09060 - csv:101214217 706.057