Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01690 ATGGCAGTTTGTACAGTGTACACAACCCAATCCCTAAACTCAACCTTCACATCCTCAACCACAAAATCCCATTTGGGCTTCCACCAAAAGCACCACCACCACCACCACCAACAACTGGTTCTCTTCAGCAGCAATGGGAAGAAATGGTGGAGCAGTAAAAGAGACGATCAGAGCAGCGTGGCCAACCGCTACGTGATCACCTGCTCGGCAGGTGGGCAACAGACAGTGGTGATTGGTCTAGCAGCAGATTCAGGGTGTGGGAAAAGCACTTTCATGAGGAGGCTAACAAGCGTGTTTGGAGGGGCAGCAGAGCCACCAAAGGGCGGCAACCCAGACTCAAACACACTCATCAGTGACACCACCACCGTGATATGTTTAGATGACTATCACTCACTGGACAGAACAGGGAGAAAAGAAAAGGGAGTCACAGCACTTGACCCAAGAGCAAACGATTTTGATCTTATGTATGAACAAGTTAAGGCCCTTAAAAACGGCGTGGCTGTTGATAAGCCTATTTACAATCATGTCACTGGCCTTCTTGACCCTCCTGAGCTCATTAAACCACCTAAAATCCTTGTCATTGAGGGCTTACACCCCATGTATGATTCAAGAGTAAGAGACCTGTTGGACTTCAGTATCTACTTGGACATCAGCAATGAAGTTAAATTTGCATGGAAAATTCAGAGGGACATGGCTGAGAGAGGGCACAGTCTAGAGAGCATCAAAGCGAGTATCGAAGCTCGAAAACCCGACTTCGACGCCTATATTGACCCACAGAAGCAATATGCAGATGCAGTGATTGAAGTGCTACCAACAAAGCTAATTCCAGATGATAATGAAGGAAAAGTGTTGAGAGTAAGGCTGATAATGAAGGAAGGGGTGGAGTTTTTTGATCCAGTTTATTTGTTTGATGAAGGCTCTACCATTTCTTGGATTCCTTGTGGAAGAAAGCTCACTTGTTCTTACCCTGGCATCAAATTCTCCTATGGCCCTGAAATTTACTATGGCAATGAGGTATCCGTACTGGAAATGGACGGGCAATTCGACAGACTCGACGAGCTGATCTATGTCGAAAGCCATCTGAGCAATCTGTCGACAAATTTCTACGGCGAAGTGACTCAACAGATGCTGAAGCACGCGGACTTCCCCGGAAGCAACAATGGCACAGGCTTCTTCCAAACCATAGTCGGATTGAAGATCAGAGATCTGTTCGAGCAGATTTCTGCCAGCAAGGCCAAGGCGCCGGTCGAGGCCGCAAAAGCTTGA 1266 47.16 MAVCTVYTTQSLNSTFTSSTTKSHLGFHQKHHHHHHQQLVLFSSNGKKWWSSKRDDQSSVANRYVITCSAGGQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKNGVAVDKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTKLIPDDNEGKVLRVRLIMKEGVEFFDPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPEIYYGNEVSVLEMDGQFDRLDELIYVESHLSNLSTNFYGEVTQQMLKHADFPGSNNGTGFFQTIVGLKIRDLFEQISASKAKAPVEAAKA 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9697160 9701573 + CmoCh02G016900.1 Cmo02g01690 377287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01690 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 346 IPR027417 -
Cmo02g01690 421 ProSitePatterns Phosphoribulokinase signature. 226 239 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cmo02g01690 421 PANTHER PHOSPHORIBULOKINASE 7 421 - -
Cmo02g01690 421 PRINTS Phosphoribulokinase family signature 82 99 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cmo02g01690 421 PRINTS Phosphoribulokinase family signature 191 209 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cmo02g01690 421 PRINTS Phosphoribulokinase family signature 226 243 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cmo02g01690 421 PRINTS Phosphoribulokinase family signature 244 267 IPR006082 GO:0005524|GO:0005975|GO:0008974
Cmo02g01690 421 Pfam Phosphoribulokinase / Uridine kinase family 77 275 IPR006083 GO:0005524|GO:0016301
Cmo02g01690 421 PANTHER URIDINE KINASE 7 421 - -
Cmo02g01690 421 CDD PRK 77 366 - -
Cmo02g01690 421 Gene3D - 72 311 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01690 K00855 PRK, prkB; phosphoribulokinase [EC:2.7.1.19] - csv:101220055 749.584
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01690 Cmo16g01248 CCT
Cmo02g01690 Cmo16g01248 ECH
Cmo02g01690 Cmo19g00223 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01690 Cmo-Chr2:9697160 Cmo09g01036 Cmo-Chr9:5556538 1.39E-14 dispersed
Cmo16g01248 Cmo-Chr16:8908808 Cmo02g01690 Cmo-Chr2:9697160 0 wgd
Cmo19g00223 Cmo-Chr19:1500529 Cmo02g01690 Cmo-Chr2:9697160 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01690 Cmo_Chr02 FPKM 6.196347 5.330672 10.436686 6.971251 8.151789 5.363826 9.381813 9.338348 14.433472 16.50001