Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01694 | ATGGAACGGAATTATCCGTATGAGAATGGCGTGCTGATGACGAGAGACCCGAAGCCAAGGCTGAGATGGACGGCTGATCTTCACGACCGTTTTGTGGACGCTGTCACCAAGCTCGGTGGCCCTGGAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAGTATAGACTTGGACTGCAAACACGAAAGCAAAATGTGGCTGAGCAAAGGAATGAAAACAGCGGGACAATCAGCAATTTTACAGTTGAGGAAGATGACAGAGGGATGCAAATTGCTGAGGCACTAAAATCACATGTTGAAGTGCAGAAAACAATACTAGAACAACTCGAGGTACAAAATAAGTTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTTGCCATTAACAGTAATCTTGGAAGTCTTGAAAACACGGGAATGCAGTTACTAAACTTTGACGCGGCTCTGTCAGATCAAATTGAAAAATTTGAGAAACATGAAATGAGAGATAGTGCGGCAAATGGAAACGATACTTGTAAGAAGACCAGCGGTTCACCCATCCAGATATGCAAGGTGGAGGCTGGAGAAGAAGACACAAACGTGTTTAATGTTGAAAGGAACATGATAAACTTTGATTTGAAATCCAAAAGGTGGCTTTGA | 723 | 42.46 | MERNYPYENGVLMTRDPKPRLRWTADLHDRFVDAVTKLGGPGKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQRNENSGTISNFTVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINSNLGSLENTGMQLLNFDAALSDQIEKFEKHEMRDSAANGNDTCKKTSGSPIQICKVEAGEEDTNVFNVERNMINFDLKSKRWL | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9712038 | 9714929 | + | CmoCh02G016940.1 | Cmo02g01694 | 377291 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01694 | 240 | SUPERFAMILY | Homeodomain-like | 18 | 75 | IPR009057 | - | |
Cmo02g01694 | 240 | Gene3D | - | 17 | 74 | - | - | |
Cmo02g01694 | 240 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 237 | IPR044848 | GO:0003700 | |
Cmo02g01694 | 240 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 8 | 237 | - | - | |
Cmo02g01694 | 240 | Pfam | MYB-CC type transfactor, LHEQLE motif | 104 | 151 | IPR025756 | - | |
Cmo02g01694 | 240 | Pfam | Myb-like DNA-binding domain | 21 | 71 | IPR001005 | - | |
Cmo02g01694 | 240 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 15 | 75 | IPR017930 | - | |
Cmo02g01694 | 240 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 18 | 72 | IPR006447 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01694 | Cmo-Chr2:9712038 | Cmo06g01253 | Cmo-Chr6:9468323 | 5.12E-54 | dispersed | |
Cmo19g00220 | Cmo-Chr19:1459343 | Cmo02g01694 | Cmo-Chr2:9712038 | 1.50E-151 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9334 | PF00249 | Myb_DNA-binding | 2.20E-07 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01694 | - | - | cmax:111491431 | 466.848 |