Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01701 ATGGAAGAAGCTTCCCAGCCACCAACAAGAGAGAGAAATCGAAGGAAGAGGAAGAGGGAAGAGGGAAGAGGGAACTATAAATTGGAGTCGACTACAAAGCTGGAGTTTCGCTGTGGCGGCGTGGGGTCCTCTCTACTTTCAAATTCTCCAAAATTCCCAATTCTCCCTCTCCAATTTCCTCCGTGTTCCACCGCTCGCTCCAGGAACATTCTATGCTGCCTTTCTTCCTATTTCTCCTTCCCATTGACAGCCTTTAGCTCTGTGGCAAGACCCCCAGATGGGTTGCTCGAATTTGTTGAGCGAGTATATATTTTCGATTCGTGCTTTTCCACTGATGTATTGCCCGATGGTATGTATCAAATATATCTGCATGAAATCATAAACGAATTACATGAAGAATTCCCAGACTCCTCCTTCCTTGCATTTAATTTTCGTGAAGGAGAGAAAATGAGCCACTTTGCAGAAATGTTGTGCGAATATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGGTGCCCTCTTCTTCCATTGTCTTTAATACAGCACTTCCTACGTGTTTGTGAAAGTTGGCTTCTGCTTGGTAATCAACAAAATATCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTCTTAGCATACCTTTTAGCTAGCTTTTTGATTTATAGAAAATTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAGGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCATGGTGTTCCGGGTTTTGATTCTCAGAATGGCTGCAGACCAGTTATTCGTATCTTTGGGAGAAATCTTTTCAGTAAGGGTGGGCTTTCCACCCAAATGATTTTTTCCATGCCCAAGAAAAATAGGGTCCTCCGTCATTACCGCCAGGTAGACTCTGATGTGATTAAAATAGATGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCAGAACCAGAAAGGGAAGTTATGATGTTTCGTATAATGTTCAACACAGCATTTATTCGATCAAACATACTGATACTAACTTCTGAAAATCTGGACATTCTTTGGGATTCAAAGGAACGCTATCCAAAAGGCTTTCGAGCTGAGATTTTGTTTGGGGAGATAGAATGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGCGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTGGATTGGATGGATACCAATGATGATGTTGCCTTGTGGCTACTGAAAAATCTTTCTGCCTTGAGTGACGTGAAAGAATTGTCAGGATGGCAAACTAAAGCAAGTTCATATTCCTCACCCGTGGATTCTGAAGAGGAAAATAATACGTCTAGCACTGCTGACAGTTCAGATGAAGTATTCGATAGTATGACAAAGTCCTTAGTTGATTTAGCTTCTACCAATTTTACAATTCCAGCTGTGGTACGTTCTTCTGAATTATTGTCTGGCAAGATCGGTGCTACTGAAGTGAATGTTTCACCAGAATCTCCTCAAACTTTTGATGAATGTCAGGATGAAGTCTTTTTAAATAAAGAATCTCTACCGTCTTCATCACCTCCATTATCTTCTCATAGCTCCTCACCCCCTCCTATAAGTTCTTTAATGCCATCACAACTGTTGCCTCCTAATGTACCATCTACCGATGTTAGTGGGGAACTTGTCTCGAACAAGATGACACCCACTGTTAAAGTGATTCCTCCTCCGCCACCGCCACCCCCACCACAACCTTTTTCTTCATCTCATAATAAACCTCATGTAGAAACTTCCATGAGTTCTGACTCAACGTCCATAACAGTGCATGGGATACCCTCTCCTTCGCTTTCACTTGTTCATAAATCCTCTAGTGCTCCTCCACCCCCACCTCCACCTCCACCTCCCCTCCCAAAAAGAACTGGTGTTCCACTGCCACCTCCTTCTTTTGTTGAAAAATCTTCTAGTGCTCCTCCACCTCCCCCTCCACCTCCAGTTCCGAATTCTTTTGGTGCTCCCCCGCCTCCCCCTCCCCCTCCACATCCACCTCTAATTCCAAAATGTTCTAGTGCTCCTCCACCTCCTCCGCCTCCAATTTTGAAATGTTCTAGTGCTCCTCCACCTCCACCTCCACCACCTATTCCAAAGTCTTCTAGTGCTCCTCCACCCCCACCTCCTCTTCCACAATCAAATCGTGGCATGACACCAGTTCCACCTCCTCCACCACTAAAACCTCCTGGTGTTGAGCTACCAAGTCAGGGTACTAAACCAACTAGGCCTCCTCCACCTCCTCCACCAACAAAGGCGTTTAGTTCTAATCCTCCGACAAGTCGTGGTGCTACACCAATGCCACCCCCTCTGCCTGGATCAACACGGTCAAATGTACCACCCCCTCCTGATGGAAGGGGGAAATCTTCTCCAGGATCAACAACTCAAGGAAGTGGTCGAGTTGCTACAGGAGTTGTAAATGCTCCAAAGAAAACCACTTTGAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAGAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCATCTGATGGAAGTGGCAGCAAAAGTGGAGGACGACGTGCTTCCAACATCAACAAACCTGAAAAAGTGCAACTGATTGACTTGCGGAGAGCATATAACTGTGAAATCATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCTACTAGGGAAGAAATGGAAACGTTGAAGAATTATACAGGTGACAAAGCAATGCTTGGAAAGTGTGAGCAGTTTTTTCTTGAGTTAATGAAGGTCCCACGAATAGAGCCCAAGTTACGAGTATTTGCTTTCAAAATTACCTTTTCAAGCCAGGTGAAGGACTTGAGATATAATTTGAATACAATAAATGATGCTACAAGAGAGGTCAAAGGATCTGAAAAATTGCGACAAGTAATGCAAACAATTCTTACATTGGGGAATGCGTTAAACCAGGGTACTGCTCGAGGCTCTGCTATAGGTTTTAAGTTGGACAGCCTTCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTTCTTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGAACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCTTCTGAAAATGACGGTGCTATCTCTATTGGTTTCCAGAAGGTTCTGAAGAATTTTCTTGATACTGCTGAAGCTGAAGTAAGGACACTCATCTCCTTATATTCTGTAGTGGGGAGAAACGCTGATTCATTATCCCAGTACTTTGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTTTTTGTTAAGATGTTCAAGAAGTCACGCGAAGAAAATGTAAGGCAGGCTGATGCTGAGAAGAAAAAAATAGAGAAGGAAGCCATGAAAGAAAGAAGTTTTGTAAAAGCAAAGTGA 3828 43.34 MEEASQPPTRERNRRKRKREEGRGNYKLESTTKLEFRCGGVGSSLLSNSPKFPILPLQFPPCSTARSRNILCCLSSYFSFPLTAFSSVARPPDGLLEFVERVYIFDSCFSTDVLPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGEKMSHFAEMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNIILLHCERGGWPLLAYLLASFLIYRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILHGVPGFDSQNGCRPVIRIFGRNLFSKGGLSTQMIFSMPKKNRVLRHYRQVDSDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILILTSENLDILWDSKERYPKGFRAEILFGEIECISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVDWMDTNDDVALWLLKNLSALSDVKELSGWQTKASSYSSPVDSEEENNTSSTADSSDEVFDSMTKSLVDLASTNFTIPAVVRSSELLSGKIGATEVNVSPESPQTFDECQDEVFLNKESLPSSSPPLSSHSSSPPPISSLMPSQLLPPNVPSTDVSGELVSNKMTPTVKVIPPPPPPPPPQPFSSSHNKPHVETSMSSDSTSITVHGIPSPSLSLVHKSSSAPPPPPPPPPPLPKRTGVPLPPPSFVEKSSSAPPPPPPPPVPNSFGAPPPPPPPPHPPLIPKCSSAPPPPPPPILKCSSAPPPPPPPPIPKSSSAPPPPPPLPQSNRGMTPVPPPPPLKPPGVELPSQGTKPTRPPPPPPPTKAFSSNPPTSRGATPMPPPLPGSTRSNVPPPPDGRGKSSPGSTTQGSGRVATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKSGGRRASNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKNYTGDKAMLGKCEQFFLELMKVPRIEPKLRVFAFKITFSSQVKDLRYNLNTINDATREVKGSEKLRQVMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKNLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISIGFQKVLKNFLDTAEAEVRTLISLYSVVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENVRQADAEKKKIEKEAMKERSFVKAK 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9740911 9751404 + CmoCh02G017010.1 Cmo02g01701 377298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01701 1275 Pfam Formin Homology 2 Domain 874 1244 IPR015425 -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 827 852 - -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 621 638 - -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 639 672 - -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 487 511 - -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 571 616 - -
Cmo02g01701 1275 PANTHER FORMIN-J 90 1269 - -
Cmo02g01701 1275 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 101 266 IPR029021 -
Cmo02g01701 1275 Gene3D Protein tyrosine phosphatase superfamily 95 270 IPR029021 -
Cmo02g01701 1275 SUPERFAMILY Formin homology 2 domain (FH2 domain) 810 1263 - -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 853 867 - -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 804 820 - -
Cmo02g01701 1275 Gene3D Formin, FH2 domain 871 1255 IPR042201 -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 571 875 - -
Cmo02g01701 1275 Coils Coil 1150 1177 - -
Cmo02g01701 1275 Coils Coil 1244 1264 - -
Cmo02g01701 1275 Pfam C2 domain of PTEN tumour-suppressor protein 278 416 IPR014020 -
Cmo02g01701 1275 SMART it6_source 868 1275 IPR015425 -
Cmo02g01701 1275 SMART PTEN_C2_2 277 417 IPR014020 -
Cmo02g01701 1275 ProSiteProfiles Formin homology-2 (FH2) domain profile. 869 1269 IPR015425 -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 1 24 - -
Cmo02g01701 1275 ProSiteProfiles C2 tensin-type domain profile. 279 418 IPR014020 -
Cmo02g01701 1275 Gene3D - 276 420 - -
Cmo02g01701 1275 MobiDBLite consensus disorder prediction 673 797 - -
Cmo02g01701 1275 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 418 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01701 Cmo-Chr2:9740911 Cmo11g00464 Cmo-Chr11:2265801 4.38E-174 dispersed
Cmo19g00208 Cmo-Chr19:1367829 Cmo02g01701 Cmo-Chr2:9740911 2.28E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01701 - - csv:101217517 952.584