Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01708 ATGGCGAAAACTGGTGTGTTTGATTCTAATCCTACAGTCGTGGGGAAGGCTACGGATTTGAAGAGGGAGTTACAGAAGCTCATCGTTGCTATAATTGATGATGATAATTTCTCCATAGACGCTATTGATCAAGCTAAAGAGATTCTTTGTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCACGCTCTTCGAATCTCTACGAGAATCTCATTTGCCCTGATGAATTCCGTTGTCCGCTTTCTACAGAGCTCATGAAAGATCCTGTTGTTGTCTCAACTGGCGAGACATTCGACAGACCCTTCATTCAAAAATGGTTGAAATCAGGAAACCGAACGTGCCCAAGAACTCAGCAAGTTCTTTCACACACGAACCTTACTCCCAATCACTTGATTCGTGGAATGATATCTCGGTGGTGTAGTAGTCGGGGAATTGAGTTGCAAGATCGTGTCCATTATCTTGATGATGATATAATAACAGAGGCTGATCGGGGCCGTTTTCATACGTTAATAGAGAAAATGTCTGCAACATTACCTGAACAAAAAGCAGCTGCTAAGGAGCTTCGGATGTTGACAAAGCGGATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCATGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAATCCCAAAGTAGTGTTCATGCGGATCTGCAAGAAGATTTGATCACAACCCTCTTGAATCTGTCAATCCATGACAACAACAAGAAACTTGTTTCTGAAACTCCCAAGGTAGTACCTCTTCTAATGGAAGCATTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCCGCCCTTTTCACTCTGTCAGCTCTCGACTCAAACAAAGTACTCATTGGGAAAGCTGGTGCCTTGAAACCACTCATCGACCTTTTAGATGAGGGGCATCCATTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATAATTCATGAAAATAAAGCAAGAGCTGTGAAAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATCATGAACCAAATGCACGTTGATGCGTTGTTGGCTATTCTAGCAATGCTTTCGAACCATCCAAAAGCTATTGAGGAAATGGGAGAACTTAGAGCTGTTCATTCCCTGCTCAGAATTATCAGGGAAAGTACTTGTTCACGTAACAAGGAAAATTGCATTGTGATCATCCATGCTATTTGCTTATACGATCGAACCCAGTGGAAGGACATGAGGGAGGAGGAGAAATGCTATCGAACCATTTCTGAACTTGCTCAGAATGGGACTTCAAGAGCCAAGAGAAAGGCCAGTGGCATACTCGAGAGACTGAACAGGGTAGTTAATACGACCCATACTACATAA 1371 42.89 MAKTGVFDSNPTVVGKATDLKRELQKLIVAIIDDDNFSIDAIDQAKEILCALKELKLRKRSRSSNLYENLICPDEFRCPLSTELMKDPVVVSTGETFDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRGMISRWCSSRGIELQDRVHYLDDDIITEADRGRFHTLIEKMSATLPEQKAAAKELRMLTKRMPSFRALFGESHDAISLLLSPLCGDKSQSSVHADLQEDLITTLLNLSIHDNNKKLVSETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKVLIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVKDGAVRVLLKKIMNQMHVDALLAILAMLSNHPKAIEEMGELRAVHSLLRIIRESTCSRNKENCIVIIHAICLYDRTQWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNTTHTT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9796300 9799945 + CmoCh02G017080.1 Cmo02g01708 377305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01708 456 Pfam Armadillo/beta-catenin-like repeat 287 323 IPR000225 GO:0005515
Cmo02g01708 456 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Cmo02g01708 456 SMART arm_5 284 324 IPR000225 GO:0005515
Cmo02g01708 456 SMART arm_5 242 283 IPR000225 GO:0005515
Cmo02g01708 456 Gene3D - 175 452 IPR011989 -
Cmo02g01708 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Cmo02g01708 456 SUPERFAMILY RING/U-box 72 148 - -
Cmo02g01708 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Cmo02g01708 456 PANTHER U BOX DOMAIN-CONTAINING 6 453 - -
Cmo02g01708 456 SUPERFAMILY ARM repeat 179 446 IPR016024 -
Cmo02g01708 456 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 453 - -
Cmo02g01708 456 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Cmo02g01708 456 CDD RING-Ubox_PUB 76 118 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01708 Cmo-Chr2:9796300 Cmo18g00911 Cmo-Chr18:10298233 1.14E-88 dispersed
Cmo12g00992 Cmo-Chr12:9286759 Cmo02g01708 Cmo-Chr2:9796300 2.25E-122 transposed
Cmo19g00194 Cmo-Chr19:1250112 Cmo02g01708 Cmo-Chr2:9796300 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01708 - - csv:101215688 755.362