Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01709 | ATGGGGCCGGGCTTCGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTCCGAAAAGATGGAAACCACTATTTTCAAAAAGGTAGAATCGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTATGCCCGAATGTTGCTGTGTATTTGACGAACCGCGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGCCGGAGAGCTATTCAGATTGATAGCAATTCTGTGAAGGGACATTATATGTTAGGCCTAGCATTAATACAAAATAATGTATATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTTGAGGAAATATGGCAGGAGCTTGCCAAAGCAAAATACAGGGAGTGGGAAAAAGCTTCTACCAAACGTTCATGGGAATTACAGACCTTGAAAGAAGCTTGTGAGGCAGCCCTTGAACAAAAGTATTTTCTTGACCATTCTGAACTAGAAGGGTTTGTAGATGAAGCTGAAATTGCTCATAGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTGAAAAAGTTGGGGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATTACACTTGATATTCTTCGTGATCCCGTTATTACTCCGAGCGGGGTTACATATGAGAGAGCAGTGATACTCGACCATTTTCGAAAGGTGACAACATTACACCTTTCACTGCCATTTTCCCATGTGGGTAACTTCGATCCCTTAACGCGGGAACTGCTCGATGAGTCACAACTTGTACCGAATTTAGCCATAAAGGAAGCAGTAGAAGCCTTTCTAGATAAGCATGGATGGGCTTATAATACAGATTAA | 885 | 44.07 | MGPGFVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVAVYLTNRALCHRKRNDWKKVEEDCRRAIQIDSNSVKGHYMLGLALIQNNVYPEGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYREWEKASTKRSWELQTLKEACEAALEQKYFLDHSELEGFVDEAEIAHRKQLKSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVTTLHLSLPFSHVGNFDPLTRELLDESQLVPNLAIKEAVEAFLDKHGWAYNTD | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 9800904 | 9805777 | - | CmoCh02G017090.1 | Cmo02g01709 | 377306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01709 | 294 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 203 | 293 | IPR013083 | - | |
Cmo02g01709 | 294 | SMART | tpr_5 | 83 | 116 | IPR019734 | GO:0005515 | |
Cmo02g01709 | 294 | SMART | tpr_5 | 15 | 48 | IPR019734 | GO:0005515 | |
Cmo02g01709 | 294 | SMART | tpr_5 | 49 | 82 | IPR019734 | GO:0005515 | |
Cmo02g01709 | 294 | CDD | RING-Ubox_CHIP | 205 | 283 | IPR045202 | - | |
Cmo02g01709 | 294 | ProSiteProfiles | U-box domain profile. | 204 | 290 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo02g01709 | 294 | PANTHER | OS08G0113300 PROTEIN | 9 | 292 | - | - | |
Cmo02g01709 | 294 | SUPERFAMILY | TPR-like | 13 | 135 | IPR011990 | GO:0005515 | |
Cmo02g01709 | 294 | Pfam | U-box domain | 205 | 289 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo02g01709 | 294 | SMART | Ubox_2 | 208 | 283 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo02g01709 | 294 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 9 | 292 | IPR045200 | GO:0000209|GO:0061630 | |
Cmo02g01709 | 294 | Pfam | TPR repeat | 22 | 56 | - | - | |
Cmo02g01709 | 294 | ProSiteProfiles | TPR repeat profile. | 15 | 48 | IPR019734 | GO:0005515 | |
Cmo02g01709 | 294 | SUPERFAMILY | RING/U-box | 199 | 291 | - | - | |
Cmo02g01709 | 294 | Gene3D | Tetratricopeptide repeat domain | 9 | 145 | IPR011990 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01709 | Cmo-Chr2:9800904 | Cmo01g01451 | Cmo-Chr1:11303043 | 1.45E-10 | dispersed | |
Cmo19g00193 | Cmo-Chr19:1241081 | Cmo02g01709 | Cmo-Chr2:9800904 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01709 | K09561 | - | csv:101215457 | 514.998 |