Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01709 ATGGGGCCGGGCTTCGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAGCTTCTCCGAAAAGATGGAAACCACTATTTTCAAAAAGGTAGAATCGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTATGCCCGAATGTTGCTGTGTATTTGACGAACCGCGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGCCGGAGAGCTATTCAGATTGATAGCAATTCTGTGAAGGGACATTATATGTTAGGCCTAGCATTAATACAAAATAATGTATATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTTGAGGAAATATGGCAGGAGCTTGCCAAAGCAAAATACAGGGAGTGGGAAAAAGCTTCTACCAAACGTTCATGGGAATTACAGACCTTGAAAGAAGCTTGTGAGGCAGCCCTTGAACAAAAGTATTTTCTTGACCATTCTGAACTAGAAGGGTTTGTAGATGAAGCTGAAATTGCTCATAGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTGAAAAAGTTGGGGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATTACACTTGATATTCTTCGTGATCCCGTTATTACTCCGAGCGGGGTTACATATGAGAGAGCAGTGATACTCGACCATTTTCGAAAGGTGACAACATTACACCTTTCACTGCCATTTTCCCATGTGGGTAACTTCGATCCCTTAACGCGGGAACTGCTCGATGAGTCACAACTTGTACCGAATTTAGCCATAAAGGAAGCAGTAGAAGCCTTTCTAGATAAGCATGGATGGGCTTATAATACAGATTAA 885 44.07 MGPGFVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVAVYLTNRALCHRKRNDWKKVEEDCRRAIQIDSNSVKGHYMLGLALIQNNVYPEGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYREWEKASTKRSWELQTLKEACEAALEQKYFLDHSELEGFVDEAEIAHRKQLKSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVTTLHLSLPFSHVGNFDPLTRELLDESQLVPNLAIKEAVEAFLDKHGWAYNTD 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9800904 9805777 - CmoCh02G017090.1 Cmo02g01709 377306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01709 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 293 IPR013083 -
Cmo02g01709 294 SMART tpr_5 83 116 IPR019734 GO:0005515
Cmo02g01709 294 SMART tpr_5 15 48 IPR019734 GO:0005515
Cmo02g01709 294 SMART tpr_5 49 82 IPR019734 GO:0005515
Cmo02g01709 294 CDD RING-Ubox_CHIP 205 283 IPR045202 -
Cmo02g01709 294 ProSiteProfiles U-box domain profile. 204 290 IPR003613 GO:0004842|GO:0016567
Cmo02g01709 294 PANTHER OS08G0113300 PROTEIN 9 292 - -
Cmo02g01709 294 SUPERFAMILY TPR-like 13 135 IPR011990 GO:0005515
Cmo02g01709 294 Pfam U-box domain 205 289 IPR003613 GO:0004842|GO:0016567
Cmo02g01709 294 SMART Ubox_2 208 283 IPR003613 GO:0004842|GO:0016567
Cmo02g01709 294 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 292 IPR045200 GO:0000209|GO:0061630
Cmo02g01709 294 Pfam TPR repeat 22 56 - -
Cmo02g01709 294 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Cmo02g01709 294 SUPERFAMILY RING/U-box 199 291 - -
Cmo02g01709 294 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01709 Cmo-Chr2:9800904 Cmo01g01451 Cmo-Chr1:11303043 1.45E-10 dispersed
Cmo19g00193 Cmo-Chr19:1241081 Cmo02g01709 Cmo-Chr2:9800904 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01709 K09561 - csv:101215457 514.998