Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01726 ATGCGTTTTAGAACCGTGAGATTGACAGCCATACATAACGGGCTAAAACGGATAATATCTACTAGCGATAGGATTGGATTGGAAAGTGGGAGTAAAATAGTTTTGAATTGTGGAGCCCTTTTGGTGCAAGAGGAAAACAGGAAAGAATTGTCTGCCACTGCCAGATTACACAAACTTCTCTTATCTCTATCTCTATCTCTCTCCCTCTTCCAAGCTGCGACGATGGTTGGTAGCACCGTGTTCACTTTGGCTGAGGTTGCCTCCCACGACAACCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTACGATGTAACAAAGTTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGCCATTGGTAAGGATGCAACCAACGATTTTTTCGATGTCGGGCACAGTAGCGCTGCTCGAGCGATGATGGAAGAATTTTACATCGGTGACATCGATAGCTCAACTATCCCTACAAAAAGGAAGTACACTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACACCAGAGTTCATTATCAAGGTCCTCCAGTTTCTAGCTCCCCTGGTAATTTTGGCATTGGCTTTTGGCGTCCATCTCTATACCAAAACAACATGA 624 45.35 MRFRTVRLTAIHNGLKRIISTSDRIGLESGSKIVLNCGALLVQEENRKELSATARLHKLLLSLSLSLSLFQAATMVGSTVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSAIGKDATNDFFDVGHSSAARAMMEEFYIGDIDSSTIPTKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILALAFGVHLYTKTT 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9856432 9858635 + CmoCh02G017260.1 Cmo02g01726 377323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01726 207 PANTHER - 78 205 - -
Cmo02g01726 207 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 78 154 IPR001199 -
Cmo02g01726 207 Gene3D - 77 157 IPR036400 -
Cmo02g01726 207 PANTHER CYTOCHROME B5 78 205 - -
Cmo02g01726 207 Pfam Cytochrome b5-like Heme/Steroid binding domain 82 153 IPR001199 -
Cmo02g01726 207 PRINTS Cytochrome B5 signature 103 113 IPR001199 -
Cmo02g01726 207 PRINTS Cytochrome B5 signature 113 127 IPR001199 -
Cmo02g01726 207 PRINTS Cytochrome B5 signature 141 153 IPR001199 -
Cmo02g01726 207 PRINTS Cytochrome B5 signature 128 135 IPR001199 -
Cmo02g01726 207 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 109 116 IPR018506 GO:0020037
Cmo02g01726 207 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 79 164 IPR036400 -
Cmo02g01726 207 SMART Cyt_b5_2 81 154 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01726 K23490 CYB5; cytochrome b5 - csv:101212882 253.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01726 Cmo-Chr2:9856432 Cmo15g01073 Cmo-Chr15:6968038 4.98E-56 dispersed
Cmo12g01305 Cmo-Chr12:11457202 Cmo02g01726 Cmo-Chr2:9856432 6.06E-21 transposed
Cmo14g01941 Cmo-Chr14:14367871 Cmo02g01726 Cmo-Chr2:9856432 2.21E-66 wgd
Cmo17g00112 Cmo-Chr17:595825 Cmo02g01726 Cmo-Chr2:9856432 9.27E-62 wgd
Cmo19g00182 Cmo-Chr19:1180756 Cmo02g01726 Cmo-Chr2:9856432 1.56E-64 wgd
Cmo02g01726 Cmo-Chr2:9856432 Cmo06g01256 Cmo-Chr6:9487661 3.13E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G53560 76.9 8.4e-58 220.3
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.2e-56 216.5
Cmo14g01941 . 1 133 NADPH P450 reductases AT5G53560 69.9 4.8e-53 204.5
Cmo06g01256 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G53560 63.9 3.9e-47 184.9
Cmo02g01726 . 80 205 NADPH P450 reductases AT5G53560 65.1 2.4e-44 175.6
Cmo14g01941 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo06g01256 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cmo17g00112 . 43 175 NADPH P450 reductases AT5G48810 62.2 3.5e-46 181.8
Cmo02g01726 . 80 206 NADPH P450 reductases AT5G48810 61.2 4.2e-44 174.9
Cmo15g01073 CST 1 134 NADPH P450 reductases AT5G48810 57.4 2.1e-43 172.6
Cmo02g01170 CST 1 134 NADPH P450 reductases AT5G48810 57.4 6.1e-43 171.0
Cmo14g01941 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.0e-50 196.8
Cmo06g01256 . 22 133 NADPH P450 reductases AT2G32720 83.0 5.0e-50 194.5
Cmo17g00112 . 64 175 NADPH P450 reductases AT2G32720 77.7 4.3e-46 181.4
Cmo02g01726 . 95 206 NADPH P450 reductases AT2G32720 69.6 3.2e-41 165.2
Cmo02g01170 CST 22 133 NADPH P450 reductases AT2G32720 66.1 1.0e-39 160.2
Cmo19g00182 . 5 108 NADPH P450 reductases AT2G32720 74.0 1.0e-39 160.2
Cmo15g01073 CST 22 133 NADPH P450 reductases AT2G32720 64.3 5.1e-39 157.9
Cmo05g00477 . 1 130 NADPH P450 reductases AT1G26340 57.5 6.1e-40 161.0
Cmo07g01169 CST 2 281 NADPH P450 reductases AT5G17770 81.1 6.3e-132 467.6
Cmo03g00203 CST 2 281 NADPH P450 reductases AT5G17770 80.7 5.4e-131 464.5
Cmo06g00047 . 2 316 NADPH P450 reductases AT5G17770 69.0 1.6e-119 426.4
Cmo20g00011 . 1 267 NADPH P450 reductases AT5G17770 64.9 3.5e-98 355.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01726 Cmo_Chr02 FPKM 19.738457 24.008245 22.135403 24.081942 22.334295 21.224247 22.695395 29.564077 31.739094 31.129538