Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01742 ATGGCGATTTCTCTCAGACTACACTTTTCGATGGCTTCTTCATTGCTCTTTCTTCTTCTCCACATCCTCTTCGTTCATTCAAGTTTTGCTGGAGATGAGAGATTGCAGAGATTCAATTCTTCATCAATGGCGGACTGGAATGTTAAGAACGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCATTGGTCGATTCGAGCATTCGCAACAGCACAGAGAGGAGGAATTTAGGGTTCTTCTCTTGTGGAACAGGAAACCCAATTGATGATTGTTGGCGATGCGACCCACGTTGGCAACTTCGCCGCAAGCACCTAGCAAATTGCGGCATTGGGTTCGGTCGCAACGCTGTCGGTGGCCGCGATGGGAGATATTATGTCGTTTCAGATCCTGGCGATGACGATCCTGTCAATCCCAGACCAGGAACCCTTCGCCATGCCGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTCATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAAACAATCGATGGCCGTGGTGCTAATGTCCACATTGCTTATGGCGCTTGCATTACAATCCAATTCGTAACCAATGTCATTATTCATGGTCTGCATATTCATGACTGCAAGCCAACGGGTAACGCCATGGTTCGAAGCTCCCCTAGTCATTATGGATGGAGGACAATGGCGGATGGGGATGGGGTTTCTATTTTTGGGTCGAGTCATATTTGGATTGACCATAACTCTCTTTCTAGCTGTGCTGATGGGCTCATCGACGCTGTGATGGGATCAACTGCCATTACCATTTCTAACAATTACTTCACCCACCACAATGAGGTGATACTTTTGGGACACAGTGACTCATATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAATAGATATCTTGCCCCCGCCAACCCTTTTGCCAAAGAGGTCACTAAGAGAGTTGATACGTGGAATGGTGAATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTTTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCCAGTTATGCAAGAGCTTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCACCATTACTTCATCTGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGTTGTTAA 1305 46.21 MAISLRLHFSMASSLLFLLLHILFVHSSFAGDERLQRFNSSSMADWNVKNEHAVDNPEEIASLVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGEWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGTITSSAGALSCRRGYRC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9932597 9936380 + CmoCh02G017420.1 Cmo02g01742 377339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01742 434 SMART amb_all 160 357 IPR002022 -
Cmo02g01742 434 PANTHER PECTATE LYASE 18-RELATED 38 431 IPR045032 GO:0030570
Cmo02g01742 434 Gene3D - 85 427 IPR012334 -
Cmo02g01742 434 PANTHER PECTATE LYASE 38 431 - -
Cmo02g01742 434 Pfam Pectate lyase 168 349 IPR002022 -
Cmo02g01742 434 SUPERFAMILY Pectin lyase-like 64 429 IPR011050 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 232 253 IPR018082 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 334 353 IPR018082 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Cmo02g01742 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01742 Cmo19g00155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01742 Cmo-Chr2:9932597 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo14g01918 Cmo-Chr14:14249841 Cmo02g01742 Cmo-Chr2:9932597 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo02g01742 Cmo-Chr2:9932597 0 wgd
Cmo19g00155 Cmo-Chr19:944910 Cmo02g01742 Cmo-Chr2:9932597 0 wgd
Cmo02g01742 Cmo-Chr2:9932597 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
Cmo02g01742 Cmo-Chr2:9932597 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01742 K01728 - csv:101207204 813.913