Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01754 ATGACAGAAATAGCCTGCTCCGCAGCCGACCTCCGCCACCTCCTTGGCGGCTCAGCTAATGCCACTGCTGTCGCCGATTACATTTGCGGTCGATTCGACGCCATTTCGAGTAAATTTGTGGACACAAGTTATGCTGTTGACAACACTTACCTTCTTTTTTCAGCGTACCTTGTGTTTGCAATGCAGCTTGGATTTGCTATGCTTTGTGCTGGTTCTGTTAGAGCCAAAAATACAATGAATATTATGCTTACTAATGTTCTTGATGCTGTCACTGGCGGCGTTTTTTATTATATCTTTGGATTCGCTTTGGCCTTTGGAACTCCTTCTAATGGCTTCATTGGTCATCATTATTTTGGCCTCTCGCAGTTCCCTTCTTCCTCCTTTGATTATGGGTTCTTTCTGTTTCAATGGGCTTTCGCCATTGCGGCTGCTGGGATTACCAGTGGCTCCATTGCTGAACGGACCCAATTTGTTGCTTATTTGATCTATTCCTCTGTTCTTACCGGTTTGATTTATCCAATTGTCTCTCATTGGTTTTGGTCTGCCGACGGGTGGGGCAGCGCAAGTAGGTCGGAGAATCTTCTATTTGGCTCAGGAGTAATCGACTTCGCCGGCTCCGGCGTGGTCCATATGGTGGGTGGCATCGCCGGATTATGGGGCGCCGTCATTGAAGGCCCTCGAATCGGCCGGTTCGATCACGCCGGCCGGTCCGTCGCCCTCCGTGGCCATAGCGGCACATTGGTCGTTCTCGGCACTTTCCTTCTCTGGTTCGGCTGGTATGGCTTCAACCCCGGGTCGTTCCTTAACATCCTCAAAGCCTACGGCACTACCACCGCCGCTCCCTTTTACGGCCAATGGAGCGCCATAGGTCGCACCGCCGTCACCACCACCCTCGCCGGCTGCACGGCGGCACTAACCACCCTCTTCGGCAAACGTCTCCTCGTCGGCCACTGGAATGTCACCGACGTCTGCAACGGCCTGTTAGGCGGATTCGCTGCCATAACATCCGGCTGCGCCGTGGTGGATCCATGGGCGGCGATTGTTTGTGGGTTTTTCTCAGCCTGGGTTTTGATCGGATTCAACAAACTAGCGGAGAAACTCAAGTATGACGATCCGTTAGAGGCGGCGCAATTGCACGGCGGGTGTGGAGCTTGGGGGATTTTGTTCACTGGCTTGTTTGCAAAACAGGCTTATGTCAACGAGATTTATTCTGGGTTGCCGGACCGGGCGTACGGGCTGCTGATGGGCGGTGGCGGGAGGCTGCTGGCGGCTCATATAGTGCAAATTTTGTCGATTGCTAGTTGGGTTAGCGTGACGATGGGGCTGGTATTTTGGTTGCTGCATAAGTTTCAGTTGCTGAGAATCACGGCGGAGGAGGAGATGGCCGGCATGGACTTGACAAGCCACGGCGGATTGGCTTATGTGTATAATGATGAAGAGAAGCCTTACGTTTGA 1455 52.78 MTEIACSAADLRHLLGGSANATAVADYICGRFDAISSKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAVTGGVFYYIFGFALAFGTPSNGFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLIYPIVSHWFWSADGWGSASRSENLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGTTTAAPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFSAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYSGLPDRAYGLLMGGGGRLLAAHIVQILSIASWVSVTMGLVFWLLHKFQLLRITAEEEMAGMDLTSHGGLAYVYNDEEKPYV 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10037187 10038711 - CmoCh02G017540.1 Cmo02g01754 377351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01754 484 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cmo02g01754 484 SUPERFAMILY Ammonium transporter 44 455 - -
Cmo02g01754 484 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cmo02g01754 484 PANTHER AMMONIUM TRANSPORTER 1 481 - -
Cmo02g01754 484 TIGRFAM amt: ammonium transporter 47 474 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cmo02g01754 484 Gene3D Ammonium transporter AmtB like domains 28 483 IPR029020 -
Cmo02g01754 484 PANTHER AMMONIUM TRANSPORTER 1 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01754 Cmo-Chr2:10037187 Cmo12g00985 Cmo-Chr12:9210128 0 dispersed
Cmo14g00042 Cmo-Chr14:211056 Cmo02g01754 Cmo-Chr2:10037187 6.99E-08 dispersed
Cmo14g01901 Cmo-Chr14:14177695 Cmo02g01754 Cmo-Chr2:10037187 0 wgd
Cmo02g01754 Cmo-Chr2:10037187 Cmo08g01012 Cmo-Chr8:6583834 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01754 K03320 - csv:101223077 884.404