Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01759 ATGGGTTCGGTGAAGAAGACGATGAAGTCGAAAACCCAGATTTTGGTTTGTGTGTTCTTGTACTGTTGGATTGGTTTTTGTACTGAGTGTTCTGCTGCTGCGTTTAGTGAAGAGGCGTTGGCTTTGGTTTCGTTTAAATCAGGGCTTGTTGATCCGTTGAAGTGGCTTAGAGATTGGAAGCTGGGCGATGGAGATGGTAAATTTGCAGGGCACTGTAACTGGACTGGAGTTTCTTGCAACTCAGATGGAGCAGTTGAAAAACTGAGCCTTTCTCGTATGAATCTCAGCGGCATTTTGTCGAACGACTTGCCTGCACTAACAAGACTCAGTTCTCTTGACTTGAGTTGCAATGAATTCTCCTCTTCTTTGCCAAAATCTATTGGAAATCTCACTTCCTTGATGAGTTTTGATGTGAGTCAAAACTCTTTTGTTGGTGAGATTCCGGTGGGGTTCGGGGAGATGGTTGAATTGAAGAACTTCAATGCCTCAAGCAACAATTTCTCTGGTTTAATCCCTGAAGATCTTGGAAATGCAACTCAGCTGGAGATTTTGGATCTCCGAGGGAGTTTTTTCGAAGGGTCAATTCCTGTATCTTTCAAGAACTTGCAGAAGTTGAAATTTCTTGGACTTTCTGGGAACAGTCTCACCGGTCGAATCCCGGCTGAGATCGGTCAGATGTCGTCGTTAGAGACGGTTATTATTGGATACAATAAGTTTGAAGGAGGGATTCCATCAGAATTTGGAAATCTCACCAATCTGAAGTATCTTGATTTGGCTGTCGGGAAACTTGGTGGTGGCATTCCAGCTGAGCTTGGGAGGCTTAAACAGCTTGAGACATTGTTCCTTTATAAGAATGAATTCAAGGATCGAATTCCATGGTCGATCGGCAATGCTACTTCATTAGTGTTTCTTGATCTTTCAGACAACAAATTGACAGGGGAAATCCCTGCTGAGGTTACTGAATTGAAGAACTTGCAGCTGCTGAATCTAATGTGTAACAAGCTGTCTGGTGAAGTACCTCCAGGGATTGGAGGGTTAACAAAATTACAGGTTCTAGAGCTATGGAACAACTCTTTTTCGGGCGCATTACCGGGCGATCTCGGTAAGAACTCGGAGTTGGTTTGGTTGGATGTCTCATCCAATTCATTCTCTGGTCCGATTCCTCCTTCGTTATGCAATTGGGGTAATCTAACCAAGCTTATCCTTTTCAACAATGCCTTTTCGGGTCCGATTCCAATTGGATTATCGTCGTGTTCATCGCTCGTTCGTGTTCGAATGCAGAACAATTTTGTATCTGGTACAATCCCAGTTGGTTTTGGGAAGCTTGGGAAGCTTGAAAGGCTAGAATTAGCAAATAATAGTCTGATTGGTAGCATCCCAAGTGATATGTCATCTTCTAAATCCCTTTCTTTTATTGATCTCTCTGAAAATAGCCTCCATTCTCCTCTTCCTTCCTCAATTCTTTCCATTCCAAATCTTCAAACCTTTATAGTCTCTGATAATCATTTAGAAGGTGAAATCCCAGACCAGTTCCAGGAGTGTCCTGCACTATCTGTTCTTGATCTCTCTTCAAACCATTTCACAGGCAGCATTCCGGAAAGCATTGCTTCATGTGAGAGATTGGTAGCTCTGAATCTCAGGAACAATCAGTTAACTGGAGAAATCCCAAAACAGATTGCAAATATGCCTTCATTGGCGGTTCTTGATCTATCCAACAACTCTCTTACAGGTAGAATACCGAATAATTTCGGTATCTCTCCCGCGCTTGAATCGTTTAATGTATCGTACAATAAGCTCGAGGGTCCAGTGCCATTAAATGGTGTGTTAAGAACAATCAATCCAAGTGATCTTCAGGGCAATGCTGGTTTATGTGGAGCTGTCCTACCTCCATGTTCACCAAATTCAGCATTCACATCAGGGCACAGGAACTCACGCTCGGCGCACATTATCGCCAGTTGGGTCATCGGAATATCGTCTGTTTTAGCAATATGTATCGCTATTTTCGGTGTTCGATCATTGTACAAGAGGTGGTACTCGACTGGAAGTTGCTTTGAAGGGCGATATGAAATGGGTGGCGGAGATTGGCCATGGAGATTGATGGCATTCCAAAGGCTTGGATTCACAAGTACTGATATTTTGGCTTGCATTAAGGAATCAAATGTGATTGGAATGGGAGCAACTGGGATTGTTTATAAAGCTGAAATGCCACAGATAAAGACAGCTGTGGCTGTAAAAAAGCTATGGAGATCAGAACCAGATCTTGAAATGGGAAGCAGTGAAGGTCTAGTAGGAGAAGTGAATTTATTGGGGAAATTAAGGCACAGGAACATAGTTCGATTACTCGGGTTTATGCACAACGATGTCGATGTAATGATCGTCTACGAGTTTATGCAAAATGGAAGCCTTGGAGAAGCCTTGCATGGTAAACAAGCAGGGAGGCTGCTAGTAGACTGGGTTTCAAGGTACAACATAGCAATTGGAGTGGCACAGGGTTTAGCTTATCTCCACCATGATTGCGACCCACCCATCATTCATCGCGACGTTAAGCCAAACAATATACTTCTCGATTCAAATCTCGAAGCACGGTTAGCTGATTTCGGGTTGGCACGAATGATGGCTCGTAAGAACGAGACGGTTTCAATGGTAGCTGGATCGTATGGCTACATTGCCCCCGCAATATATTCGATTAGTTGTTTTGTAACTTCTGTTGATTCTGCAGAATATGGATACACTTTAAAGGTGGATGAAAAGATCGACATTTACAGCTACGGCGTTGTTCTTTTGGAGCTGTTGACGGGGAAGAAGCCATTAGATTCTGAGTTCGGAGAATCGGTGGACATTGTTGAATGGATTAGAAGGAAGGTTAGAGACAACAGACGTTTAGAAGAAGCATTAGATCCAAATCTGGGAAATTTCAAGCATGTTCAAGAAGAAATGCTGTTTGTGCTTAGAATTGCTCTTCTCTGCACTGCAAAGCATCCAAAAGACAGGCCTTCCATGAGAGATATAATAACAATGCTTGGAGAAGCAAAACCAAGGAGAAAAAGCAACAGTAATGGCAATGAAGGATTTGGAACTAACAAAGACAAAGAGAAGCCAGTTTTCAACACCTCCCCAGTAAATGGCCTTCTCTAG 3135 42.9 MGSVKKTMKSKTQILVCVFLYCWIGFCTECSAAAFSEEALALVSFKSGLVDPLKWLRDWKLGDGDGKFAGHCNWTGVSCNSDGAVEKLSLSRMNLSGILSNDLPALTRLSSLDLSCNEFSSSLPKSIGNLTSLMSFDVSQNSFVGEIPVGFGEMVELKNFNASSNNFSGLIPEDLGNATQLEILDLRGSFFEGSIPVSFKNLQKLKFLGLSGNSLTGRIPAEIGQMSSLETVIIGYNKFEGGIPSEFGNLTNLKYLDLAVGKLGGGIPAELGRLKQLETLFLYKNEFKDRIPWSIGNATSLVFLDLSDNKLTGEIPAEVTELKNLQLLNLMCNKLSGEVPPGIGGLTKLQVLELWNNSFSGALPGDLGKNSELVWLDVSSNSFSGPIPPSLCNWGNLTKLILFNNAFSGPIPIGLSSCSSLVRVRMQNNFVSGTIPVGFGKLGKLERLELANNSLIGSIPSDMSSSKSLSFIDLSENSLHSPLPSSILSIPNLQTFIVSDNHLEGEIPDQFQECPALSVLDLSSNHFTGSIPESIASCERLVALNLRNNQLTGEIPKQIANMPSLAVLDLSNNSLTGRIPNNFGISPALESFNVSYNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSPNSAFTSGHRNSRSAHIIASWVIGISSVLAICIAIFGVRSLYKRWYSTGSCFEGRYEMGGGDWPWRLMAFQRLGFTSTDILACIKESNVIGMGATGIVYKAEMPQIKTAVAVKKLWRSEPDLEMGSSEGLVGEVNLLGKLRHRNIVRLLGFMHNDVDVMIVYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIAIGVAQGLAYLHHDCDPPIIHRDVKPNNILLDSNLEARLADFGLARMMARKNETVSMVAGSYGYIAPAIYSISCFVTSVDSAEYGYTLKVDEKIDIYSYGVVLLELLTGKKPLDSEFGESVDIVEWIRRKVRDNRRLEEALDPNLGNFKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSNGNEGFGTNKDKEKPVFNTSPVNGLL 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10066921 10070528 + CmoCh02G017590.1 Cmo02g01759 377356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01759 1044 SUPERFAMILY RNI-like 315 604 - -
Cmo02g01759 1044 PANTHER UNNAMED PRODUCT 26 1021 - -
Cmo02g01759 1044 Gene3D Ribonuclease Inhibitor 35 198 IPR032675 -
Cmo02g01759 1044 Pfam Protein kinase domain 718 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01759 1044 SMART LRR_typ_2 322 345 IPR003591 -
Cmo02g01759 1044 SMART LRR_typ_2 106 130 IPR003591 -
Cmo02g01759 1044 SMART LRR_typ_2 562 586 IPR003591 -
Cmo02g01759 1044 SMART LRR_typ_2 442 466 IPR003591 -
Cmo02g01759 1044 SMART LRR_typ_2 346 370 IPR003591 -
Cmo02g01759 1044 SMART LRR_typ_2 202 226 IPR003591 -
Cmo02g01759 1044 SMART LRR_typ_2 514 538 IPR003591 -
Cmo02g01759 1044 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 1021 - -
Cmo02g01759 1044 SMART serkin_6 716 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01759 1044 ProSitePatterns Protein kinases ATP-binding region signature. 722 746 IPR017441 GO:0005524
Cmo02g01759 1044 SUPERFAMILY RNI-like 87 405 - -
Cmo02g01759 1044 Pfam Leucine rich repeat 491 551 IPR001611 GO:0005515
Cmo02g01759 1044 ProSiteProfiles Protein kinase domain profile. 716 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01759 1044 MobiDBLite consensus disorder prediction 1008 1044 - -
Cmo02g01759 1044 SUPERFAMILY Protein kinase-like (PK-like) 714 1007 IPR011009 -
Cmo02g01759 1044 Gene3D Transferase(Phosphotransferase) domain 1 801 1031 - -
Cmo02g01759 1044 PRINTS Leucine-rich repeat signature 562 575 - -
Cmo02g01759 1044 PRINTS Leucine-rich repeat signature 301 314 - -
Cmo02g01759 1044 Pfam Leucine Rich Repeat 565 583 IPR001611 GO:0005515
Cmo02g01759 1044 Pfam Leucine Rich Repeat 180 202 IPR001611 GO:0005515
Cmo02g01759 1044 Pfam Leucine rich repeat N-terminal domain 37 80 IPR013210 -
Cmo02g01759 1044 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Cmo02g01759 1044 Gene3D Ribonuclease Inhibitor 322 635 IPR032675 -
Cmo02g01759 1044 Gene3D Phosphorylase Kinase; domain 1 716 800 - -
Cmo02g01759 1044 Gene3D Ribonuclease Inhibitor 266 321 IPR032675 -
Cmo02g01759 1044 Gene3D Ribonuclease Inhibitor 203 265 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01494 Cmo-Chr1:11551326 Cmo02g01759 Cmo-Chr2:10066921 1.59E-158 dispersed
Cmo02g01759 Cmo-Chr2:10066921 Cmo16g00218 Cmo-Chr16:963327 0 dispersed
Cmo10g00083 Cmo-Chr10:371698 Cmo02g01759 Cmo-Chr2:10066921 3.41E-09 dispersed
Cmo10g00853 Cmo-Chr10:4035979 Cmo02g01759 Cmo-Chr2:10066921 8.28E-72 dispersed
Cmo11g00061 Cmo-Chr11:290504 Cmo02g01759 Cmo-Chr2:10066921 4.58E-06 dispersed
Cmo14g01517 Cmo-Chr14:12161482 Cmo02g01759 Cmo-Chr2:10066921 8.04E-138 dispersed
Cmo02g01759 Cmo-Chr2:10066921 Cmo04g00368 Cmo-Chr4:1787381 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74151 PF00069 Pkinase 7.50E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01759 - - cpep:111794871 1982.22