Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01770 | ATGAAATTTGTTCCTTCCTTTGATTTAAGGATGAAAATTGAGGCGAGTCTTGTCTCATCCATTGCAAGTTCAAGTGCAAGGCAGCATAGTAGTGCAGAGGTTTCAATGGAACGAGAACTGGTATCAAGGCCACTTGTTCATTCCAACCATTTACACTCTAGCAGTGGAGTAGTTGGCAATATATTTTCATCTTCTCCAGGGTTTTCAACAGATCTTCACTACTCATCCGTTTCGTTTTATGAAAACCAATCATCAACAAACCATCCTACTGGTGAAAATGTCAATTCCTGGTGTACGGATGCACTGCCAGATTTTCTGGAAGCTCCTGAAAATAACCCTGTTGGCAATAGTCACGTAGAAAACAATAGTTGCAGCTCTCTTATGGTTTCAGATGAATTCAGTAAAGAAAATGATTGGCAGGATTGGACAGATAGACTAATAACTGATGATTCATTGACTTCTAATTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATAGCGTACCAAGCATCTAAACCAGTGATAAAAATGCAAGTGCAGCAGTCTCAAATTCAAAGTCAGCTTCCTTCTTCTGGGGAAATTTCTATGATTGCTACCTCAACTCCCTCTTCAAATGGAGCTCCCTCCAAGCCACGAATGCGATGGACACCAGAACTTCATGATGCATTTGTAGAGGCTGTAAACAAACTTGGTGGCAGTGAAAGAGCTACTCCAAAAGGTGTTCTAAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGGACGGCTAGATACCAACCAGAATCATCAAAAGGGGCAATGGAGAAAAGCACCACCTCGCTTGAGGATATTTCATCCCTCGATTTGAAAACGAGTATTGATATCACAGAGGCTCTACGTCTGCAGATGGAAGTTCAGAAAAAGTTACATGAGCAACTCGAGATCCAACGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAACAATGCAAGTCAGGCAATAACCTGAAAGCATCCACATTGGATGAGTCTCCATTTTCAGATACGGTTGATGATTTCTCTGCCAAAACAGAGCTGGAAACTTCCCAGGTGGAAATTTGCACAGCCCGCACTGATCCATGTGATGCTGACACAATATCCGAAAATGTTACTAACGTAGAAGGCGGGAAGCCAGAAGCTCGGAATAGAAAAGTCCCCGAAAATACCGAGCCAGACGTTTCAAAATCTAGCTCCCAGCTATCAAAGCGCCAAAGGACAGAGAATTAG | 1314 | 41.86 | MKFVPSFDLRMKIEASLVSSIASSSARQHSSAEVSMERELVSRPLVHSNHLHSSSGVVGNIFSSSPGFSTDLHYSSVSFYENQSSTNHPTGENVNSWCTDALPDFLEAPENNPVGNSHVENNSCSSLMVSDEFSKENDWQDWTDRLITDDSLTSNWSDLLVDANVADLEPKIAYQASKPVIKMQVQQSQIQSQLPSSGEISMIATSTPSSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGAMEKSTTSLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSGNNLKASTLDESPFSDTVDDFSAKTELETSQVEICTARTDPCDADTISENVTNVEGGKPEARNRKVPENTEPDVSKSSSQLSKRQRTEN | 437 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 10102355 | 10106076 | + | CmoCh02G017700.1 | Cmo02g01770 | 377367 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01770 | 437 | Pfam | MYB-CC type transfactor, LHEQLE motif | 302 | 348 | IPR025756 | - | |
Cmo02g01770 | 437 | MobiDBLite | consensus disorder prediction | 390 | 437 | - | - | |
Cmo02g01770 | 437 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 213 | 273 | IPR017930 | - | |
Cmo02g01770 | 437 | Gene3D | - | 215 | 274 | - | - | |
Cmo02g01770 | 437 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 216 | 270 | IPR006447 | GO:0003677 | |
Cmo02g01770 | 437 | SUPERFAMILY | Homeodomain-like | 214 | 270 | IPR009057 | - | |
Cmo02g01770 | 437 | Pfam | Myb-like DNA-binding domain | 218 | 269 | IPR001005 | - | |
Cmo02g01770 | 437 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED | 21 | 435 | - | - | |
Cmo02g01770 | 437 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE | 21 | 435 | IPR044848 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01770 | Cmo19g00123 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01770 | Cmo-Chr2:10102355 | Cmo11g00986 | Cmo-Chr11:5250875 | 3.47E-98 | dispersed | |
Cmo07g01291 | Cmo-Chr7:7134301 | Cmo02g01770 | Cmo-Chr2:10102355 | 1.17E-51 | transposed | |
Cmo19g00123 | Cmo-Chr19:723628 | Cmo02g01770 | Cmo-Chr2:10102355 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9338 | PF00249 | Myb_DNA-binding | 4.10E-09 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01770 | - | - | cmax:111491651 | 782.326 |