Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01770 ATGAAATTTGTTCCTTCCTTTGATTTAAGGATGAAAATTGAGGCGAGTCTTGTCTCATCCATTGCAAGTTCAAGTGCAAGGCAGCATAGTAGTGCAGAGGTTTCAATGGAACGAGAACTGGTATCAAGGCCACTTGTTCATTCCAACCATTTACACTCTAGCAGTGGAGTAGTTGGCAATATATTTTCATCTTCTCCAGGGTTTTCAACAGATCTTCACTACTCATCCGTTTCGTTTTATGAAAACCAATCATCAACAAACCATCCTACTGGTGAAAATGTCAATTCCTGGTGTACGGATGCACTGCCAGATTTTCTGGAAGCTCCTGAAAATAACCCTGTTGGCAATAGTCACGTAGAAAACAATAGTTGCAGCTCTCTTATGGTTTCAGATGAATTCAGTAAAGAAAATGATTGGCAGGATTGGACAGATAGACTAATAACTGATGATTCATTGACTTCTAATTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATAGCGTACCAAGCATCTAAACCAGTGATAAAAATGCAAGTGCAGCAGTCTCAAATTCAAAGTCAGCTTCCTTCTTCTGGGGAAATTTCTATGATTGCTACCTCAACTCCCTCTTCAAATGGAGCTCCCTCCAAGCCACGAATGCGATGGACACCAGAACTTCATGATGCATTTGTAGAGGCTGTAAACAAACTTGGTGGCAGTGAAAGAGCTACTCCAAAAGGTGTTCTAAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGGACGGCTAGATACCAACCAGAATCATCAAAAGGGGCAATGGAGAAAAGCACCACCTCGCTTGAGGATATTTCATCCCTCGATTTGAAAACGAGTATTGATATCACAGAGGCTCTACGTCTGCAGATGGAAGTTCAGAAAAAGTTACATGAGCAACTCGAGATCCAACGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAACAATGCAAGTCAGGCAATAACCTGAAAGCATCCACATTGGATGAGTCTCCATTTTCAGATACGGTTGATGATTTCTCTGCCAAAACAGAGCTGGAAACTTCCCAGGTGGAAATTTGCACAGCCCGCACTGATCCATGTGATGCTGACACAATATCCGAAAATGTTACTAACGTAGAAGGCGGGAAGCCAGAAGCTCGGAATAGAAAAGTCCCCGAAAATACCGAGCCAGACGTTTCAAAATCTAGCTCCCAGCTATCAAAGCGCCAAAGGACAGAGAATTAG 1314 41.86 MKFVPSFDLRMKIEASLVSSIASSSARQHSSAEVSMERELVSRPLVHSNHLHSSSGVVGNIFSSSPGFSTDLHYSSVSFYENQSSTNHPTGENVNSWCTDALPDFLEAPENNPVGNSHVENNSCSSLMVSDEFSKENDWQDWTDRLITDDSLTSNWSDLLVDANVADLEPKIAYQASKPVIKMQVQQSQIQSQLPSSGEISMIATSTPSSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGAMEKSTTSLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSGNNLKASTLDESPFSDTVDDFSAKTELETSQVEICTARTDPCDADTISENVTNVEGGKPEARNRKVPENTEPDVSKSSSQLSKRQRTEN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10102355 10106076 + CmoCh02G017700.1 Cmo02g01770 377367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01770 437 Pfam MYB-CC type transfactor, LHEQLE motif 302 348 IPR025756 -
Cmo02g01770 437 MobiDBLite consensus disorder prediction 390 437 - -
Cmo02g01770 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 273 IPR017930 -
Cmo02g01770 437 Gene3D - 215 274 - -
Cmo02g01770 437 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 216 270 IPR006447 GO:0003677
Cmo02g01770 437 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Cmo02g01770 437 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Cmo02g01770 437 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 21 435 - -
Cmo02g01770 437 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 21 435 IPR044848 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01770 - - - cmax:111491651 782.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01770 Cmo19g00123 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01770 Cmo-Chr2:10102355 Cmo11g00986 Cmo-Chr11:5250875 3.47E-98 dispersed
Cmo07g01291 Cmo-Chr7:7134301 Cmo02g01770 Cmo-Chr2:10102355 1.17E-51 transposed
Cmo19g00123 Cmo-Chr19:723628 Cmo02g01770 Cmo-Chr2:10102355 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g615 Blo05g00493 . . Bda10g00450 . Bpe06g00341 . . . . Cma02g01726 Cma19g00111 Car02g01478 . . . . . . . . . . . . . . . . . . Cone17ag0682 . . . . . Chy04g01110 . . Blo10g00280 . . . . Bma09g00485 Bma15g00732 . Cmo02g01770 Cmo19g00123 . . . . Cpe05g00081 . . . . . . . . Cla07g00121 Cam07g0128 Cec07g0164 Cco07g0129 Clacu07g0122 Cmu07g0186 Cre07g0492 . Csa03g02617 . Cme04g00960
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo19g00231 CCT,CST 152 354 G2-like Transcription Factor Family AT5G16560 52.2 6.7e-42 169.1
Cmo09g00190 CCT 1 165 G2-like Transcription Factor Family AT5G42630 56.9 1.3e-39 160.6
Cmo12g00449 CCT,CST 4 143 G2-like Transcription Factor Family AT5G42630 58.3 9.4e-38 154.5
Cmo04g02159 . 20 256 G2-like Transcription Factor Family AT1G25550 52.2 1.1e-48 191.0
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT5G05090 54.3 5.7e-74 275.0
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.4e-72 270.4
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT5G05090 58.6 1.7e-70 263.5
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT5G05090 52.9 5.0e-70 261.9
Cmo06g01253 CST 12 316 G2-like Transcription Factor Family AT4G13640 56.9 9.5e-62 234.6
Cmo14g01946 CST 1 293 G2-like Transcription Factor Family AT4G13640 57.6 5.2e-60 228.8
Cmo02g01770 CST 87 356 G2-like Transcription Factor Family AT3G04450 52.4 7.3e-57 218.8
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo05g00868 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 1.2e-36 151.4
Cmo19g01150 . 1 379 G2-like Transcription Factor Family AT1G79430 53.6 3.0e-86 316.2
Cmo10g01273 . 1 376 G2-like Transcription Factor Family AT1G79430 50.9 6.7e-78 288.5
Cmo20g00312 . 1 366 G2-like Transcription Factor Family AT1G79430 53.0 1.5e-77 287.3
Cmo06g01253 CST 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cmo14g01946 CST 29 193 G2-like Transcription Factor Family AT1G79430 59.4 7.5e-37 152.1
Cmo03g00639 . 84 327 G2-like Transcription Factor Family AT2G01060 59.7 1.7e-53 206.8
Cmo07g00368 . 66 323 G2-like Transcription Factor Family AT2G01060 56.9 1.9e-52 203.4
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.7e-89 326.2
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT3G10760 60.2 7.4e-87 318.2
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT3G10760 59.2 1.1e-85 314.3
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT3G10760 58.6 1.5e-79 293.9
Cmo07g01147 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.5e-60 228.0
Cmo14g00500 . 1 193 G2-like Transcription Factor Family AT2G40970 59.4 1.4e-58 223.8
Cmo03g01093 . 1 204 G2-like Transcription Factor Family AT2G40970 58.5 5.4e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004632 1 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9338 PF00249 Myb_DNA-binding 4.10E-09 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo02g01770 Cmo_Chr02 FPKM 3.163094 2.502872 4.159357 3.680468 2.594011 4.608291 1.678434 1.490412 1.238818 1.064054