Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01770 ATGAAATTTGTTCCTTCCTTTGATTTAAGGATGAAAATTGAGGCGAGTCTTGTCTCATCCATTGCAAGTTCAAGTGCAAGGCAGCATAGTAGTGCAGAGGTTTCAATGGAACGAGAACTGGTATCAAGGCCACTTGTTCATTCCAACCATTTACACTCTAGCAGTGGAGTAGTTGGCAATATATTTTCATCTTCTCCAGGGTTTTCAACAGATCTTCACTACTCATCCGTTTCGTTTTATGAAAACCAATCATCAACAAACCATCCTACTGGTGAAAATGTCAATTCCTGGTGTACGGATGCACTGCCAGATTTTCTGGAAGCTCCTGAAAATAACCCTGTTGGCAATAGTCACGTAGAAAACAATAGTTGCAGCTCTCTTATGGTTTCAGATGAATTCAGTAAAGAAAATGATTGGCAGGATTGGACAGATAGACTAATAACTGATGATTCATTGACTTCTAATTGGAGTGACCTTCTAGTGGATGCCAATGTTGCAGATTTGGAACCAAAGATAGCGTACCAAGCATCTAAACCAGTGATAAAAATGCAAGTGCAGCAGTCTCAAATTCAAAGTCAGCTTCCTTCTTCTGGGGAAATTTCTATGATTGCTACCTCAACTCCCTCTTCAAATGGAGCTCCCTCCAAGCCACGAATGCGATGGACACCAGAACTTCATGATGCATTTGTAGAGGCTGTAAACAAACTTGGTGGCAGTGAAAGAGCTACTCCAAAAGGTGTTCTAAAGCTTATGCAAGTGGAGGGTTTGACAATCTATCATGTGAAGAGCCACTTGCAGAAATATAGGACGGCTAGATACCAACCAGAATCATCAAAAGGGGCAATGGAGAAAAGCACCACCTCGCTTGAGGATATTTCATCCCTCGATTTGAAAACGAGTATTGATATCACAGAGGCTCTACGTCTGCAGATGGAAGTTCAGAAAAAGTTACATGAGCAACTCGAGATCCAACGAAATTTACAGTTAAGAATAGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAACAATGCAAGTCAGGCAATAACCTGAAAGCATCCACATTGGATGAGTCTCCATTTTCAGATACGGTTGATGATTTCTCTGCCAAAACAGAGCTGGAAACTTCCCAGGTGGAAATTTGCACAGCCCGCACTGATCCATGTGATGCTGACACAATATCCGAAAATGTTACTAACGTAGAAGGCGGGAAGCCAGAAGCTCGGAATAGAAAAGTCCCCGAAAATACCGAGCCAGACGTTTCAAAATCTAGCTCCCAGCTATCAAAGCGCCAAAGGACAGAGAATTAG 1314 41.86 MKFVPSFDLRMKIEASLVSSIASSSARQHSSAEVSMERELVSRPLVHSNHLHSSSGVVGNIFSSSPGFSTDLHYSSVSFYENQSSTNHPTGENVNSWCTDALPDFLEAPENNPVGNSHVENNSCSSLMVSDEFSKENDWQDWTDRLITDDSLTSNWSDLLVDANVADLEPKIAYQASKPVIKMQVQQSQIQSQLPSSGEISMIATSTPSSNGAPSKPRMRWTPELHDAFVEAVNKLGGSERATPKGVLKLMQVEGLTIYHVKSHLQKYRTARYQPESSKGAMEKSTTSLEDISSLDLKTSIDITEALRLQMEVQKKLHEQLEIQRNLQLRIEEQGKYLQMMFEKQCKSGNNLKASTLDESPFSDTVDDFSAKTELETSQVEICTARTDPCDADTISENVTNVEGGKPEARNRKVPENTEPDVSKSSSQLSKRQRTEN 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10102355 10106076 + CmoCh02G017700.1 Cmo02g01770 377367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01770 437 Pfam MYB-CC type transfactor, LHEQLE motif 302 348 IPR025756 -
Cmo02g01770 437 MobiDBLite consensus disorder prediction 390 437 - -
Cmo02g01770 437 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 273 IPR017930 -
Cmo02g01770 437 Gene3D - 215 274 - -
Cmo02g01770 437 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 216 270 IPR006447 GO:0003677
Cmo02g01770 437 SUPERFAMILY Homeodomain-like 214 270 IPR009057 -
Cmo02g01770 437 Pfam Myb-like DNA-binding domain 218 269 IPR001005 -
Cmo02g01770 437 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 21 435 - -
Cmo02g01770 437 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 21 435 IPR044848 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01770 Cmo19g00123 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01770 Cmo-Chr2:10102355 Cmo11g00986 Cmo-Chr11:5250875 3.47E-98 dispersed
Cmo07g01291 Cmo-Chr7:7134301 Cmo02g01770 Cmo-Chr2:10102355 1.17E-51 transposed
Cmo19g00123 Cmo-Chr19:723628 Cmo02g01770 Cmo-Chr2:10102355 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9338 PF00249 Myb_DNA-binding 4.10E-09 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01770 - - cmax:111491651 782.326