Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01776 ATGAAGAGTGATGTTAAGATAAAATGGCGGCGGAGAGCTGGAAAAGGGGAGAACATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAGAAGAGCTGGTGATGATATGATTCCTGCATCAGAATTGCAGTCGACTTTGGAAAATTCAGCAAGCGAACACTCCTCACGAATCGGCGAGATTGTCATGAAGCCAGAAATTGGCAATATAGAAGAAGCCGAGTCTTCGCTTCGTGAGAGCGGTTGCTTGAATTATGAGGAAGCAAGAGCATTGCTGGGAAGATATGAATATCAAAAAGGAAACATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATCACTGCAGTAACTAGTAAGATAATGATCTCCATTGCTAGAACAGGACACCGCCCAAGGAGACGATCGCAACGTTTTAGTGACCCACCATTGTCTATGCATGCTGTCAGTTTACTGTTGGAAGCCATCTTTTTAAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTTGGAGAAGCTGCTCAGTCTTGCAAAGTGATTCTGGACATACTTGAATCTTCATTTCCCGAAGGGTTGCCTGAAAACTTCGGTGCTGATTGTAAATTGCAGGACACAGTAACGAAAGCCGTTGAGCTGATACCAGAACTATGGAAACAAGGCGATTCTTCTCAAGAAGCGATCCTTTCATATCGGCGGGCACTCCTTCATCAATGGAACCTCGATGCGGGAACCACCGCTCGAATTCAGAAAGAGTTTGCCATTTTTCTTCTGTACAGTGGAAATGAAGCATACCCTCCAAATCTCCGGTCTCAAATGGACAGCTCATTTGTACCAAAAAACAATAATGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCACTAACAATATCAGGGGATACTAGCGCTTTGGCAGGTCAAGTAGAGGAATTGCCTCCTGGGATTCTACATCGAAACGATAGGTACCATACTCTCGCTCTTTGTTACTATGGAGCTGGAGAAGACTTGGCTGCTTTGAATCTTTTGAGGAAATTGTTGGGCAGTCATGAGGATCCTAAATCTCTTCCTGCTTTATTAATGGCGTCAAAGATTTGTGGAGAGCACGGTGATCATGCTGAAGAAGGAACACGTTATGCTCGTCGAGCTCTTCAAAACTTGGATGTTGGATGTGATCATCTGATAGGTGTTGCCAACTGTTTGTTGGGTGTCTCTTTGTCTGTATATTCTAAATCAGCAGTTGTAGATTCTGAGCGGTCCTCCAGACAATCTGAGGCGATAGAGGTCCTGGAAGCTGCACTGAAGAAGACTCGAATGACCGATCCTATTGTTCTCTACCATTTGAGTGTTGAATATGCTGATGAGAGGAAGTTGGATTCAGCACTTCATTTTGCAAAGAAGTGTCTCAAACTGGAAGGTGGATCTAATATTAGAACTTGGTTACTGGTGGCTCGGATTCTCTCTGCCCTGAAACGATTCGTGGATGGCGAAGGTATTATAAATGCAGCTCTGGAGCAGACTGGGAAATGGGATCAAGGCGAATTGCTTCGAACAAAAGCAAAGCTTTTGATTGCACAAGATGAGCTGAAAGGTGCTATTGGGACTTATACTCAGTTACTCGCTGTTTTTCAAGTTCAGAGTAAAAGTTTTGGCTTGGGAGATAAGAAGCTACATAAGAACAGCAGAAATTGTATCAGAAGCTTGCAATTGGAAGTGTGGCATGATTTAGCTCTAGTCTATATAAGGCTTTCACAATGGCACAATGCCGAGGCTTGCCTTTCCAAGTCAAAGGCCATCCATTCTCATTCGGCATCTAGATGTCATCTCACAGGTATGCTTTATGAAGCAAAAGGATTGTATAAAGAAGCTTTGAAAGCTTTTATGGCTGCTCTGGACATTGATCCCGTTCATGTCCCGAGCTTGGTTTCGTCTGCCGTAGTTATCAGACGTCTGGGCCACCAATCGCACCCCGTTGTTCGCAGCTTTTTGATGGATGCTGTACGTCTCAACCAGACAAACCACGCTGCGTGGTACAATCTCGGGCTATTCTACAGAGCTGAAGGAACCAAATCTTCATTGGCTGAAGCTGTTGAATGTTTTGAGGCTGCAACATTTCTTGAAGAGACTGCTCCTGTTGAACCCTTCAGATAA 2205 43.49 MKSDVKIKWRRRAGKGENIRKIMKCLCSGERRAGDDMIPASELQSTLENSASEHSSRIGEIVMKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAVTSKIMISIARTGHRPRRRSQRFSDPPLSMHAVSLLLEAIFLKAKSLQGLGRFGEAAQSCKVILDILESSFPEGLPENFGADCKLQDTVTKAVELIPELWKQGDSSQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGNEAYPPNLRSQMDSSFVPKNNNEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTSALAGQVEELPPGILHRNDRYHTLALCYYGAGEDLAALNLLRKLLGSHEDPKSLPALLMASKICGEHGDHAEEGTRYARRALQNLDVGCDHLIGVANCLLGVSLSVYSKSAVVDSERSSRQSEAIEVLEAALKKTRMTDPIVLYHLSVEYADERKLDSALHFAKKCLKLEGGSNIRTWLLVARILSALKRFVDGEGIINAALEQTGKWDQGELLRTKAKLLIAQDELKGAIGTYTQLLAVFQVQSKSFGLGDKKLHKNSRNCIRSLQLEVWHDLALVYIRLSQWHNAEACLSKSKAIHSHSASRCHLTGMLYEAKGLYKEALKAFMAALDIDPVHVPSLVSSAVVIRRLGHQSHPVVRSFLMDAVRLNQTNHAAWYNLGLFYRAEGTKSSLAEAVECFEAATFLEETAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10125829 10130303 - CmoCh02G017760.1 Cmo02g01776 377373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01776 734 SUPERFAMILY TPR-like 439 560 IPR011990 GO:0005515
Cmo02g01776 734 PANTHER PROTEIN NPG1 13 734 IPR043376 -
Cmo02g01776 734 SMART tpr_5 460 493 IPR019734 GO:0005515
Cmo02g01776 734 SMART tpr_5 153 186 IPR019734 GO:0005515
Cmo02g01776 734 SMART tpr_5 531 564 IPR019734 GO:0005515
Cmo02g01776 734 SMART tpr_5 588 621 IPR019734 GO:0005515
Cmo02g01776 734 SMART tpr_5 622 655 IPR019734 GO:0005515
Cmo02g01776 734 SMART tpr_5 495 528 IPR019734 GO:0005515
Cmo02g01776 734 SMART tpr_5 692 728 IPR019734 GO:0005515
Cmo02g01776 734 PANTHER PROTEIN NPGR2 13 734 - -
Cmo02g01776 734 Gene3D Tetratricopeptide repeat domain 577 728 IPR011990 GO:0005515
Cmo02g01776 734 SUPERFAMILY TPR-like 531 706 IPR011990 GO:0005515
Cmo02g01776 734 Gene3D Tetratricopeptide repeat domain 46 576 IPR011990 GO:0005515
Cmo02g01776 734 Pfam Tetratricopeptide repeat 624 654 IPR019734 GO:0005515
Cmo02g01776 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01776 Cmo19g00117 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01776 Cmo-Chr2:10125829 Cmo09g00716 Cmo-Chr9:3547046 0 dispersed
Cmo14g01869 Cmo-Chr14:14051061 Cmo02g01776 Cmo-Chr2:10125829 0 wgd
Cmo19g00117 Cmo-Chr19:686724 Cmo02g01776 Cmo-Chr2:10125829 0 wgd
Cmo02g01776 Cmo-Chr2:10125829 Cmo06g01314 Cmo-Chr6:9826153 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01776 K21843 - csv:101223229 1214.91