Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01795 ATGGAATCCTATTACTTTTCGTTCTCCGATTCAGATTTCTCGACGGAATGTTCACTCGGATCACCGGAGGAATTGTCGTTTTCATGGAGCGATTTTTTCTCGATAAACAGTGTGCTAGAAAACTCACTCTCACTGACGGATGAGTTTCTCGGCCATCAACCATCGGAATCGGAATTGAAGATTGCGGTGAAGGAAGAAATCGAAGTGAGTTCGATTGATTTGGAGAGGGAGAAAGAGAGAAAAACGACGGAGAAGAATTACAGAGGAGTGAGGCGGCGGCCATGGGGGAAGTACGCGGCGGAGATTAGGGATTCGACAAGGCAAGGAGTTAGGGTTTGGCTTGGGACTTTCGATAGTGCCGAAGCCGCGGCTTTAGCTTACGATCAAGCGGCGTATTCGATGAGAGGAGCACTGGCGGTGCTGAATTTTCCGGTGGAAATGGTGAGGGAATCGCTGCAGGAGATTAAGTATGAATTGGAAGAAGGATTGTCACCAGTGGTGGCTTTGAAGAGAAAACACTCGCTAAGAAGGAAGTCAGGGGCGGCGGCGAAAAGCCAGGGGGTGGCGGAGACGAAGAAGATGAAGAAAAAGAAGAATGTAGTGATTTTGGAAGATTTGGGAACAGAGTATTTGGAGGAACTTTTGATGCTGAGTTCATGCGAGAGTAGTAGTAGTAGCAGTAGTATGAGTCCTTTCTGA 699 47.64 MESYYFSFSDSDFSTECSLGSPEELSFSWSDFFSINSVLENSLSLTDEFLGHQPSESELKIAVKEEIEVSSIDLEREKERKTTEKNYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAYSMRGALAVLNFPVEMVRESLQEIKYELEEGLSPVVALKRKHSLRRKSGAAAKSQGVAETKKMKKKKNVVILEDLGTEYLEELLMLSSCESSSSSSSMSPF 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10198332 10199030 - CmoCh02G017950.1 Cmo02g01795 377392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01795 232 CDD AP2 85 145 IPR001471 GO:0003700|GO:0006355
Cmo02g01795 232 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700|GO:0006355
Cmo02g01795 232 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 57 217 - -
Cmo02g01795 232 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Cmo02g01795 232 PANTHER DNA-BINDING DOMAIN 57 217 IPR044808 GO:0003700|GO:0009873
Cmo02g01795 232 Pfam AP2 domain 86 136 IPR001471 GO:0003700|GO:0006355
Cmo02g01795 232 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Cmo02g01795 232 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Cmo02g01795 232 SUPERFAMILY DNA-binding domain 86 146 IPR016177 GO:0003677
Cmo02g01795 232 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01795 Cmo08g00292 CCT
Cmo02g01795 Cmo19g00097 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01795 Cmo-Chr2:10198332 Cmo03g01303 Cmo-Chr3:9811610 3.08E-31 dispersed
Cmo14g01846 Cmo-Chr14:13963597 Cmo02g01795 Cmo-Chr2:10198332 1.99E-52 wgd
Cmo19g00097 Cmo-Chr19:548824 Cmo02g01795 Cmo-Chr2:10198332 5.01E-100 wgd
Cmo02g01795 Cmo-Chr2:10198332 Cmo06g01334 Cmo-Chr6:9931260 1.12E-51 wgd
Cmo02g01795 Cmo-Chr2:10198332 Cmo08g01062 Cmo-Chr8:6866695 2.12E-44 wgd
Cmo02g01795 Cmo-Chr2:10198332 Cmo08g00292 Cmo-Chr8:1799748 3.34E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9341 PF00847 AP2 2.20E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01795 K14516 - csv:101220325 294.278