Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01800 ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTCAGAGGGTGTGTTTTTGCTCCTTACTTCTGCCATGAACAAGGAGCCTCTCACTTTGCCGCCATTCATAAGGTGTTTGGAGCCAGCAATGTGTCTAAGCTTCTTGCTCGCCTCCCTGTTACTGAGCGCTGTGAGGCTGCTGTTACCATCTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCCATCTATGGCTGCGTTTCTCACATCTTTGCCCTTCAACAACAGGTTGTGAGTCTTCAGGCACAGCTTGCTTCTCTCAAGGAACAAGCAGCAGAGAGCATGATGAACGGCTCAAGTAACAACGGGGGTGGGGTGAATGAGAAGAATTGCAGAAAGATTCCATCTCATTTCCAAGATCTCCATAACTGGTTTCAATCGGATCATTCGAACGTAACGCCTGGATTCAACCCGAACCCGACTCAAGATTCATCATCCAACCCTTATTATGATGAGAACTATCGCATTATGATCAATTCCCAATCCAATGGGAACTATGAACATCACATGGCAAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGACTATTCCATGTATACTCTTGATCATCTGCATTCAAATGTTCAACAATGGGGCTTCAATGAGTCGCCTGATGATTTACAATCAGTCGCTTTTGGTCATGCTCGACGTTGGTAA 723 45.37 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGASHFAAIHKVFGASNVSKLLARLPVTERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESMMNGSSNNGGGVNEKNCRKIPSHFQDLHNWFQSDHSNVTPGFNPNPTQDSSSNPYYDENYRIMINSQSNGNYEHHMAKMEESGSYGSFEETSDYSMYTLDHLHSNVQQWGFNESPDDLQSVAFGHARRW 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10225373 10226477 + CmoCh02G018000.1 Cmo02g01800 377397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01800 240 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Cmo02g01800 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 238 - -
Cmo02g01800 240 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cmo02g01800 240 Coils Coil 87 114 - -
Cmo02g01800 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 238 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01800 Cmo19g00091 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01800 Cmo-Chr2:10225373 Cmo19g00091 Cmo-Chr19:504806 1.12E-151 dispersed
Cmo02g01800 Cmo-Chr2:10225373 Cmo02g01801 Cmo-Chr2:10226987 5.39E-51 tandem
Cmo08g00269 Cmo-Chr8:1684199 Cmo02g01800 Cmo-Chr2:10225373 8.65E-59 transposed
Cmo19g00089 Cmo-Chr19:498897 Cmo02g01800 Cmo-Chr2:10225373 1.87E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9342 PF03195 LOB 6.40E-36 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01800 K13945 - csv:101214764 393.275