Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01801 ATGGCGTCTTCCACTACAGCCAATTCTCATGCCTCTGCCTCTGCCTCTGCCTCTGCCTCCCCTTGCGGAGCATGCAAGTTTCTGCGACGAAAGTGTGCGCCTGATTGCATCTTTGCTCCTTACTTTTGCTCTGAACAAAGCGCTGCCAGATTTGCCGCCATTCATAAGGTGTTTGGAGCCAGTAACGTGTCCAAGTTGCTCCTCCACGTCCCTGTTCCTCATCGCTGTGAGGCAGTTGTCAGTATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATCTTTTTGCTCTCCAACAACAGGTGGCGTACTTGCAAACACAGCTGATGCAAGCCAGGGCTCAACTTGCACAAACCCACATGGAGATTCAATGGACCGGAATCCCAAAGTTTCCAAGTTATCAATCCCAAGTAACCAACTCTGCAGTTTCCCCACAGACCTCTCTGGAATCAGCTGCCGACAATGATGAAGCTCAATTTCAACAATTTCCTACAAAAATACCAGCTTCTTGTCATGCTGATGTTGGAGAGCTCCAAGCTTTAGCACTCAGAATGATGAGAAACTAA 585 48.72 MASSTTANSHASASASASASPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHMEIQWTGIPKFPSYQSQVTNSAVSPQTSLESAADNDEAQFQQFPTKIPASCHADVGELQALALRMMRN 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10226987 10227723 - CmoCh02G018010.1 Cmo02g01801 377398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01801 194 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Cmo02g01801 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 13 193 - -
Cmo02g01801 194 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 193 - -
Cmo02g01801 194 Pfam Lateral organ boundaries (LOB) domain 21 118 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01801 Cmo19g00089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01801 Cmo-Chr2:10226987 Cmo19g00089 Cmo-Chr19:498897 5.46E-87 dispersed
Cmo02g01800 Cmo-Chr2:10225373 Cmo02g01801 Cmo-Chr2:10226987 5.39E-51 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9343 PF03195 LOB 2.20E-36 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01801 K13944 - csv:101214521 254.988