Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo02g01826 ATGGCTTTCCAGAAGATCGAACTAACCCAATTATATTCGATTCTTCTATGGTTTACTGTGTACGCGATAACGTACTGCTCTTCGGAATCGTCGACGTGCTTGACGGTGTACAAGGAAGGCGGCGCTCCCGCGGTATTTCAATCCCCGAAATGTCCTCTCTGGAAGCTCTCTGACTACACTTTTCAATCTCCCAACGCCCCCCATTGTCAAATTGCAATGCATCAAGGTCGACGAAAGTATCAGGAGGATCGCACTCTCTGTGCTCTAGATATTCGAATTCCCTTCCCAAGTAGAACAGGTATTATGGAGGTCCCTGTGGGAATCATAGCAGTTTTTGATGGTCATAATGGAGCTGAAGCTAGTGAGATGGCTTCAAAGATTTTGTTGGAGTATTTTGTGGTGCATACTTATTTTCTTCTTGATGCCACTTATTCTGGAATTTTCAAGAGACCCATTAACTCATTTTCAAATGAGAAGGAACATGGTACCAAGTTTAATGAGTTCAATTGGAATGAGGAAATTAGTAACCGTGATCGGGAACTTGGAAGGCGTAAATACCTACTTCCAGCAGATTTTGCTGATGACTACCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGACATTGATAAAACGTTTTCCAAGGAAGCACATAAAAATAATCTGGTTTCGGGTTCTACTGCTACTGTTATATTATTGGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCGAAGACTTTTTTGTGCTCTGAAACATTTCAGTCACCTGCTGAGGCTAAAGCTACCTTTTTACGGTTATACAAGCAAAAAAGATATAGTGGTGCCTCACGTGCAAGGGGCTATGGAAATTCTAAACCAGACTCATTTGATGGGCTGACACATTTTTATGCCAAAGAATTGACTAGGGATCACCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCACGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGTCAGTTGGCTATAAGCAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGAGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGTTTCATCTGATGGCATTTTTGAGAAGTTGAGCTCACAAGATGTTTGTGACTTGTTGTGGGAAATACACAATGATCGTATGTCAATTTCCAAGCATTCTCCTTCATGCTCATACTCATTGGCGGAATGCATCGTTAGTACGGCCTTTGAAAGAGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGATCTGCTATTTCTTCTCAGAGGTTTCAGGAGGGGAGGTTTGTTGTGCAGAGGGACTCAAGTTTTCCCATATCTGGAATAGAAAAGCTTATTAAAGAGCACTCAGCCAATAGCTTCTCTTCCAATGCTGTGCAATTGGAGCATTCTCATCCAGTCATGTCCAAGTTCAAGAGACTATTAGTTGAAGTAAGACACAATAAGCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAATACAAGGATTATTTGTTGAGGACTCAAACTGATGAAGAAGAATATTTATGTGATCTACCCCATGCTCTTCCAGAGTCCCTCAATCAGCCATATGGTGGATCTTTAAATGTGTACAATGACCAAAGCTTGTGCTTTCATCTTGGAGCTAAAGATCAGTGCTTTCATCCTGAAGGCTTTGCTAGTTTTATTGGTTTGCTTGAATCAATTCCTTTCCACGATCCTGGTTCAGATTATCAACTATTTGAGCATCCACCACCTATATTGAGGTATGTGTTAAAGAAAAGATTTGGTCAGGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATGGGAACTGCCAGGAAGCTTTTACTTCAGTAGGAGAGAATATTTATGATTCGTGCAACTCATCTTTTGGAGATGCCAATGCCAGAAATGGTAGATACTCTTCAAATAGTTCTCAAGCCTATGCTCTGGAGGATAACGTGTTCATCATGAAACGTGTAATGGTTGAAAGAGGTGCTGGTGTCTATTTGAGTGGCTTACGGGAGAAATATTTTGGTGAAATATTTTTGAATGCTTCTACGCGACTTGAAGACGTGTTATCGACTGGAACATCAAACTTTGTCTTTGAAAAGTCACCATGGGGATCTAAAGACTTATTGGTAAAGGATGAATCCCTGAGTTATAAATTAGGGGAAACTAGGCAGTTTAAAAATGCTTTCCCGAATCAGTTTGGACCAAAGAGTGTTATGTATGAAGAAGGTTTAAACCATATTGTGAGATTTGTAGAATCTTTTGAATCCCGGTCTAACGAAATATGGCTTGTATTTCATTACGAAGGCATATCCCTCTCAAAGCTCATATATTCTATTGAAGATGCCGATGAGGAAAAAGTTGAACAAAAAAACCATGTTCAAATTTTACAACCTTCGAAGTGGTGGCATTGGTTGAAAACAACAGAAGCAGGACAAGAGGAAATGAAAAGTTTGATACGTCAGCTGTTGATGGCTCTCAAGTCTTGTCATGACCGCAATATCACTCACAGGGATATAAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGGAAGTCGAAGGGGGGATGAGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGTAGTGCTATTGATGAATTCACAGTCAAGCATCTATATGGGTCTGCTGGGCCTTCCAGAGTGGAACAAACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAGATGTCAAGTGCAACTTTGAAGTATGACATGTGGAGCGTTGGTGTAGTGATGCTAGAATTGATCTTAGGATCACCTAATGTAAGTGATTTAACCCGAGTTCTTTTGGACCAGCATCTTGAGGGTTGGAATGAAGGCTTAAAGCAGCTAGCATACAAGCTTAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGTCCCTCAAAAAGTTATAAAAAAAATGTTCATCAAGGAGATTCACCAGCATCCTGGAAATGCTCTGAAGAAGTTTTTGCCCACCAAATAAAGAGTAGAGATCCTCTTAAACTAGGGTTTCCAAATGTTTGGGCTCTACGGTTGGTCCGCAACCTACTACAATGGAATCCAGAGGACCGTTTAAATGTCAATGATGCTCTGCGACATCCTTATTTCGTCCCTTCTCCTAAATGA 3252 40.84 MAFQKIELTQLYSILLWFTVYAITYCSSESSTCLTVYKEGGAPAVFQSPKCPLWKLSDYTFQSPNAPHCQIAMHQGRRKYQEDRTLCALDIRIPFPSRTGIMEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRPINSFSNEKEHGTKFNEFNWNEEISNRDRELGRRKYLLPADFADDYHLEILKEALLRAIQDIDKTFSKEAHKNNLVSGSTATVILLADAQILVANIGDSKTFLCSETFQSPAEAKATFLRLYKQKRYSGASRARGYGNSKPDSFDGLTHFYAKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAISRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVVSSDGIFEKLSSQDVCDLLWEIHNDRMSISKHSPSCSYSLAECIVSTAFERGSMDNMAAIVVPLRSAISSQRFQEGRFVVQRDSSFPISGIEKLIKEHSANSFSSNAVQLEHSHPVMSKFKRLLVEVRHNKLGCFYLSENLDEYKDYLLRTQTDEEEYLCDLPHALPESLNQPYGGSLNVYNDQSLCFHLGAKDQCFHPEGFASFIGLLESIPFHDPGSDYQLFEHPPPILRYVLKKRFGQGSYGEVWLAFHGNCQEAFTSVGENIYDSCNSSFGDANARNGRYSSNSSQAYALEDNVFIMKRVMVERGAGVYLSGLREKYFGEIFLNASTRLEDVLSTGTSNFVFEKSPWGSKDLLVKDESLSYKLGETRQFKNAFPNQFGPKSVMYEEGLNHIVRFVESFESRSNEIWLVFHYEGISLSKLIYSIEDADEEKVEQKNHVQILQPSKWWHWLKTTEAGQEEMKSLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNGSRRGDENFSTKMRIIDFGSAIDEFTVKHLYGSAGPSRVEQTYDYTPPEALLNSSWYQEMSSATLKYDMWSVGVVMLELILGSPNVSDLTRVLLDQHLEGWNEGLKQLAYKLRSFMELCILIPGSPSKSYKKNVHQGDSPASWKCSEEVFAHQIKSRDPLKLGFPNVWALRLVRNLLQWNPEDRLNVNDALRHPYFVPSPK 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10328967 10351705 + CmoCh02G018260.1 Cmo02g01826 377423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo02g01826 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 858 870 IPR008271 GO:0004672|GO:0006468
Cmo02g01826 1083 Pfam Protein phosphatase 2C 201 433 IPR001932 -
Cmo02g01826 1083 ProSiteProfiles PPM-type phosphatase domain profile. 68 440 IPR001932 -
Cmo02g01826 1083 SUPERFAMILY PP2C-like 64 441 IPR036457 -
Cmo02g01826 1083 SMART serkin_6 609 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01826 1083 CDD PP2Cc 75 440 IPR001932 -
Cmo02g01826 1083 PANTHER ALPHABET, ISOFORM E-RELATED 20 597 - -
Cmo02g01826 1083 Pfam Protein kinase domain 769 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01826 1083 ProSiteProfiles Protein kinase domain profile. 609 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo02g01826 1083 Gene3D Transferase(Phosphotransferase) domain 1 812 1078 - -
Cmo02g01826 1083 SUPERFAMILY Protein kinase-like (PK-like) 767 1080 IPR011009 -
Cmo02g01826 1083 SMART PP2C_4 62 438 IPR001932 -
Cmo02g01826 1083 Gene3D - 60 447 IPR036457 -
Cmo02g01826 1083 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 20 597 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01826 Cmo-Chr2:10328967 Cmo05g00437 Cmo-Chr5:2039564 4.62E-20 dispersed
Cmo02g01826 Cmo-Chr2:10328967 Cmo12g00591 Cmo-Chr12:3625701 2.67E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74153 PF00069 Pkinase 3.60E-26 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo02g01826 - - csv:101210198 1845.48