Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo02g01826 | ATGGCTTTCCAGAAGATCGAACTAACCCAATTATATTCGATTCTTCTATGGTTTACTGTGTACGCGATAACGTACTGCTCTTCGGAATCGTCGACGTGCTTGACGGTGTACAAGGAAGGCGGCGCTCCCGCGGTATTTCAATCCCCGAAATGTCCTCTCTGGAAGCTCTCTGACTACACTTTTCAATCTCCCAACGCCCCCCATTGTCAAATTGCAATGCATCAAGGTCGACGAAAGTATCAGGAGGATCGCACTCTCTGTGCTCTAGATATTCGAATTCCCTTCCCAAGTAGAACAGGTATTATGGAGGTCCCTGTGGGAATCATAGCAGTTTTTGATGGTCATAATGGAGCTGAAGCTAGTGAGATGGCTTCAAAGATTTTGTTGGAGTATTTTGTGGTGCATACTTATTTTCTTCTTGATGCCACTTATTCTGGAATTTTCAAGAGACCCATTAACTCATTTTCAAATGAGAAGGAACATGGTACCAAGTTTAATGAGTTCAATTGGAATGAGGAAATTAGTAACCGTGATCGGGAACTTGGAAGGCGTAAATACCTACTTCCAGCAGATTTTGCTGATGACTACCATTTGGAAATTTTGAAAGAAGCACTGTTGAGAGCTATACAAGACATTGATAAAACGTTTTCCAAGGAAGCACATAAAAATAATCTGGTTTCGGGTTCTACTGCTACTGTTATATTATTGGCAGATGCACAAATTTTGGTTGCAAACATTGGTGACTCGAAGACTTTTTTGTGCTCTGAAACATTTCAGTCACCTGCTGAGGCTAAAGCTACCTTTTTACGGTTATACAAGCAAAAAAGATATAGTGGTGCCTCACGTGCAAGGGGCTATGGAAATTCTAAACCAGACTCATTTGATGGGCTGACACATTTTTATGCCAAAGAATTGACTAGGGATCACCATCCAGATAGAGAGGATGAAAGATCTAGGGTGGAGATTGCTGGGGGTCACGTTGTTGATTGGGGTGGTGTACCTCGAGTAAATGGTCAGTTGGCTATAAGCAGAGCAATTGGTGATGTGTCTTTTAAAAGCTATGGAGTTATATCTGCACCAGAAGTGACTGACTGGCAACCTTTGTCTACCAACGATAGCTATTTGGTGGTTTCATCTGATGGCATTTTTGAGAAGTTGAGCTCACAAGATGTTTGTGACTTGTTGTGGGAAATACACAATGATCGTATGTCAATTTCCAAGCATTCTCCTTCATGCTCATACTCATTGGCGGAATGCATCGTTAGTACGGCCTTTGAAAGAGGCAGTATGGATAACATGGCTGCTATTGTGGTTCCTTTAAGATCTGCTATTTCTTCTCAGAGGTTTCAGGAGGGGAGGTTTGTTGTGCAGAGGGACTCAAGTTTTCCCATATCTGGAATAGAAAAGCTTATTAAAGAGCACTCAGCCAATAGCTTCTCTTCCAATGCTGTGCAATTGGAGCATTCTCATCCAGTCATGTCCAAGTTCAAGAGACTATTAGTTGAAGTAAGACACAATAAGCTGGGATGTTTTTATCTGTCTGAGAATCTGGATGAATACAAGGATTATTTGTTGAGGACTCAAACTGATGAAGAAGAATATTTATGTGATCTACCCCATGCTCTTCCAGAGTCCCTCAATCAGCCATATGGTGGATCTTTAAATGTGTACAATGACCAAAGCTTGTGCTTTCATCTTGGAGCTAAAGATCAGTGCTTTCATCCTGAAGGCTTTGCTAGTTTTATTGGTTTGCTTGAATCAATTCCTTTCCACGATCCTGGTTCAGATTATCAACTATTTGAGCATCCACCACCTATATTGAGGTATGTGTTAAAGAAAAGATTTGGTCAGGGTTCCTATGGTGAAGTATGGCTGGCTTTTCATGGGAACTGCCAGGAAGCTTTTACTTCAGTAGGAGAGAATATTTATGATTCGTGCAACTCATCTTTTGGAGATGCCAATGCCAGAAATGGTAGATACTCTTCAAATAGTTCTCAAGCCTATGCTCTGGAGGATAACGTGTTCATCATGAAACGTGTAATGGTTGAAAGAGGTGCTGGTGTCTATTTGAGTGGCTTACGGGAGAAATATTTTGGTGAAATATTTTTGAATGCTTCTACGCGACTTGAAGACGTGTTATCGACTGGAACATCAAACTTTGTCTTTGAAAAGTCACCATGGGGATCTAAAGACTTATTGGTAAAGGATGAATCCCTGAGTTATAAATTAGGGGAAACTAGGCAGTTTAAAAATGCTTTCCCGAATCAGTTTGGACCAAAGAGTGTTATGTATGAAGAAGGTTTAAACCATATTGTGAGATTTGTAGAATCTTTTGAATCCCGGTCTAACGAAATATGGCTTGTATTTCATTACGAAGGCATATCCCTCTCAAAGCTCATATATTCTATTGAAGATGCCGATGAGGAAAAAGTTGAACAAAAAAACCATGTTCAAATTTTACAACCTTCGAAGTGGTGGCATTGGTTGAAAACAACAGAAGCAGGACAAGAGGAAATGAAAAGTTTGATACGTCAGCTGTTGATGGCTCTCAAGTCTTGTCATGACCGCAATATCACTCACAGGGATATAAAACCTGAGAACATGGTGATATGCTTTGAAGATCAGGCTACTGGAAAATGCTTGAATGGAAGTCGAAGGGGGGATGAGAACTTCTCTACTAAAATGCGCATTATTGACTTTGGTAGTGCTATTGATGAATTCACAGTCAAGCATCTATATGGGTCTGCTGGGCCTTCCAGAGTGGAACAAACTTATGATTACACACCTCCTGAAGCCTTGCTTAATTCAAGTTGGTATCAGGAGATGTCAAGTGCAACTTTGAAGTATGACATGTGGAGCGTTGGTGTAGTGATGCTAGAATTGATCTTAGGATCACCTAATGTAAGTGATTTAACCCGAGTTCTTTTGGACCAGCATCTTGAGGGTTGGAATGAAGGCTTAAAGCAGCTAGCATACAAGCTTAGGTCGTTCATGGAGTTGTGCATTTTAATTCCTGGGAGTCCCTCAAAAAGTTATAAAAAAAATGTTCATCAAGGAGATTCACCAGCATCCTGGAAATGCTCTGAAGAAGTTTTTGCCCACCAAATAAAGAGTAGAGATCCTCTTAAACTAGGGTTTCCAAATGTTTGGGCTCTACGGTTGGTCCGCAACCTACTACAATGGAATCCAGAGGACCGTTTAAATGTCAATGATGCTCTGCGACATCCTTATTTCGTCCCTTCTCCTAAATGA | 3252 | 40.84 | MAFQKIELTQLYSILLWFTVYAITYCSSESSTCLTVYKEGGAPAVFQSPKCPLWKLSDYTFQSPNAPHCQIAMHQGRRKYQEDRTLCALDIRIPFPSRTGIMEVPVGIIAVFDGHNGAEASEMASKILLEYFVVHTYFLLDATYSGIFKRPINSFSNEKEHGTKFNEFNWNEEISNRDRELGRRKYLLPADFADDYHLEILKEALLRAIQDIDKTFSKEAHKNNLVSGSTATVILLADAQILVANIGDSKTFLCSETFQSPAEAKATFLRLYKQKRYSGASRARGYGNSKPDSFDGLTHFYAKELTRDHHPDREDERSRVEIAGGHVVDWGGVPRVNGQLAISRAIGDVSFKSYGVISAPEVTDWQPLSTNDSYLVVSSDGIFEKLSSQDVCDLLWEIHNDRMSISKHSPSCSYSLAECIVSTAFERGSMDNMAAIVVPLRSAISSQRFQEGRFVVQRDSSFPISGIEKLIKEHSANSFSSNAVQLEHSHPVMSKFKRLLVEVRHNKLGCFYLSENLDEYKDYLLRTQTDEEEYLCDLPHALPESLNQPYGGSLNVYNDQSLCFHLGAKDQCFHPEGFASFIGLLESIPFHDPGSDYQLFEHPPPILRYVLKKRFGQGSYGEVWLAFHGNCQEAFTSVGENIYDSCNSSFGDANARNGRYSSNSSQAYALEDNVFIMKRVMVERGAGVYLSGLREKYFGEIFLNASTRLEDVLSTGTSNFVFEKSPWGSKDLLVKDESLSYKLGETRQFKNAFPNQFGPKSVMYEEGLNHIVRFVESFESRSNEIWLVFHYEGISLSKLIYSIEDADEEKVEQKNHVQILQPSKWWHWLKTTEAGQEEMKSLIRQLLMALKSCHDRNITHRDIKPENMVICFEDQATGKCLNGSRRGDENFSTKMRIIDFGSAIDEFTVKHLYGSAGPSRVEQTYDYTPPEALLNSSWYQEMSSATLKYDMWSVGVVMLELILGSPNVSDLTRVLLDQHLEGWNEGLKQLAYKLRSFMELCILIPGSPSKSYKKNVHQGDSPASWKCSEEVFAHQIKSRDPLKLGFPNVWALRLVRNLLQWNPEDRLNVNDALRHPYFVPSPK | 1083 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 10328967 | 10351705 | + | CmoCh02G018260.1 | Cmo02g01826 | 377423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo02g01826 | 1083 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 858 | 870 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo02g01826 | 1083 | Pfam | Protein phosphatase 2C | 201 | 433 | IPR001932 | - | |
Cmo02g01826 | 1083 | ProSiteProfiles | PPM-type phosphatase domain profile. | 68 | 440 | IPR001932 | - | |
Cmo02g01826 | 1083 | SUPERFAMILY | PP2C-like | 64 | 441 | IPR036457 | - | |
Cmo02g01826 | 1083 | SMART | serkin_6 | 609 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01826 | 1083 | CDD | PP2Cc | 75 | 440 | IPR001932 | - | |
Cmo02g01826 | 1083 | PANTHER | ALPHABET, ISOFORM E-RELATED | 20 | 597 | - | - | |
Cmo02g01826 | 1083 | Pfam | Protein kinase domain | 769 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01826 | 1083 | ProSiteProfiles | Protein kinase domain profile. | 609 | 1078 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo02g01826 | 1083 | Gene3D | Transferase(Phosphotransferase) domain 1 | 812 | 1078 | - | - | |
Cmo02g01826 | 1083 | SUPERFAMILY | Protein kinase-like (PK-like) | 767 | 1080 | IPR011009 | - | |
Cmo02g01826 | 1083 | SMART | PP2C_4 | 62 | 438 | IPR001932 | - | |
Cmo02g01826 | 1083 | Gene3D | - | 60 | 447 | IPR036457 | - | |
Cmo02g01826 | 1083 | PANTHER | PROTEIN PHOSPHATASE 2C 50-RELATED | 20 | 597 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01826 | Cmo-Chr2:10328967 | Cmo05g00437 | Cmo-Chr5:2039564 | 4.62E-20 | dispersed | |
Cmo02g01826 | Cmo-Chr2:10328967 | Cmo12g00591 | Cmo-Chr12:3625701 | 2.67E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74153 | PF00069 | Pkinase | 3.60E-26 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo02g01826 | - | - | csv:101210198 | 1845.48 |