Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00035 ATGTACTCCACGACTGATAATATGGGAAAGGAAAATTTGCTGCAGAGAGTAGATGACAACACTGAAGTGAATGGTTGTTCAACTGCCGAGAACGAAGATCTCGGTTGTCAGTCTCGCCATAGTGTAGGCAAGGAATCTGGGGCAAGTTGTCGTGTGTGTCAATGTAGCGAATCTGACAGGAGAGGTGATGCTGTTTTAGGATTTCTAGGCATCACTCCTCCAATAATGGAAGAAAGAAAAAGTGATCGGGATTCTACGTCCGAGAAGCAAAGTCTAGAACATGTTGATGGTTGTTCTGTGTTGAAAAAAAACGTTAAAGGGGATTCTGGTTCAATTAAGTTCATAGGCCCTAATGGGGAGGTTTTCATTTGCAAAGCTGATATTGAAATGGGTTCATGTCATCTTGAAGATGCATTAGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACACTATGCATGTGCTCTCAAATGGTTTGTCAGCCATGGATCAACAGTTTGTGAAATTTGTGGATGTATTGCGGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTAAAAGAATATGAAGCTTTAAGGGAAAGAACTGCTCGTGGGGAACCGAATCCTATGCAGACAATTGCTAGTACCGATATAGATCCTGATGCTGTTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATTGCATTGTGGTTTAGTCCTCATAGTTATATTAGCAACAATAACTCTAGTGCAGCCTCCCAGGTTGTTTCTGAACATTTGAATACCATCTCAGAAAATGTCGTTCGTGCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGGTACTGGAATTCTCCTTGCTACAGGTCTGCTCACCGTGACGCTTGCTTGCCTAATAGCTCCTCGTGTGGGGAAGAAAACTGCAAAAAGTGGCCTTCATATTCTTCTCGGAGGAGTTTGTGCGTTAACAGTAGTGGTTGTACTGAGTGTAAAGTTCACATTGAGAAAGATATTGAACCAGATCAGATACTGCCTCCAGTTGGTAAATTATTGTTGGTTTGATCTCGTCGGTTCGATAGTTTAG 1083 42.84 MYSTTDNMGKENLLQRVDDNTEVNGCSTAENEDLGCQSRHSVGKESGASCRVCQCSESDRRGDAVLGFLGITPPIMEERKSDRDSTSEKQSLEHVDGCSVLKKNVKGDSGSIKFIGPNGEVFICKADIEMGSCHLEDALVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERTARGEPNPMQTIASTDIDPDAVAAVRRQRLSEIALWFSPHSYISNNNSSAASQVVSEHLNTISENVVRAENPATRWAVEGTGILLATGLLTVTLACLIAPRVGKKTAKSGLHILLGGVCALTVVVVLSVKFTLRKILNQIRYCLQLVNYCWFDLVGSIV 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 667550 681000 + CmoCh03G000350.1 Cmo03g00035 377498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00035 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 176 IPR013083 -
Cmo03g00035 360 SUPERFAMILY RING/U-box 140 175 - -
Cmo03g00035 360 Pfam RING-variant domain 139 173 IPR011016 GO:0008270
Cmo03g00035 360 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 343 - -
Cmo03g00035 360 SMART ringv_2 133 174 IPR011016 GO:0008270
Cmo03g00035 360 ProSiteProfiles Zinc finger RING-CH-type profile. 116 180 IPR011016 GO:0008270
Cmo03g00035 360 PANTHER ZINC FINGER, RING-CH-TYPE 15 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00035 Cmo-Chr3:667550 Cmo07g01303 Cmo-Chr7:7258932 0 dispersed
Cmo03g00035 Cmo-Chr3:667550 Cmo14g00095 Cmo-Chr14:448197 7.11E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00035 - - csv:101218157 537.339