Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00041 ATGGCGGATTACGATCTAACTCCACGAATTGCTCCGAATCTGGACCGCCATCTTGTTTTCCCTCTCCTTGAGTTTCTTCAAGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAACTTCTCAACAAAACCAATATGGTTGACTACGCCATGGACATCCATAAGTCGTTGTACCACACTGACGATGTTCCTCAAGATATGGTGGACAGGAGGGCGGAAGTCGTGGGGAGGCTTAAAGCTTTGGAGGAGTCTGCTGCGCCACTTGTTACTTTTCTGCAGAATCCTGCTGCTGTTCAGGAATTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGATTGGTCCAGATCAAATAGAAGCTCTATATCAATATGCCAAATTTCAGTTCGAGTGCGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCTTTGTGCACAAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAATGGGCAGCTGAGATTTTAATGCAGAACTGGGATACTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATTATTGACTCTAAGGTGAATTTCTCGTCGCATATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATTTTTTTCAATCATGACAATGGAAGAACACAGATAATTGACCTTTTTAATCAAGATAAGTATTTAAGTGCCATTCAAACCAATGCTCCCCATCTATTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAGTTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGATGGGGCACAAAAAAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGACCCTTTCCTAGGAAAGAGGCTTGAAGAGGGAAACCTTTCTACCGTTCCTTTGAGGGACGAGTTCTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACACCAGCGCATTGACATGAGTGTCCTTGCCGAGAAGTTGAACTTAAATTACGAGGAAGCGGAGCGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCCAAGATTGATTCCAAGACGGGAACGGTTATAATGGAACCAAACCAGCCCAACGTATATGAAGAACTGATAGATCACACCAAATCATTATCTGGGCGTACCTACAAGTTAGTCACTCAACTACTAGAGCATGCACAGGCTCAGGCAACCAGATAA 1317 43.05 MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQDMVDRRAEVVGRLKALEESAAPLVTFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKWAAEILMQNWDTAVEELNRLKEIIDSKVNFSSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 751691 754934 - CmoCh03G000410.1 Cmo03g00041 377504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00041 438 SUPERFAMILY Winged helix DNA-binding domain 334 405 IPR036390 -
Cmo03g00041 438 SUPERFAMILY TPR-like 120 193 IPR011990 GO:0005515
Cmo03g00041 438 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 430 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cmo03g00041 438 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 436 - -
Cmo03g00041 438 SMART eIF3_N_2 5 137 IPR019010 -
Cmo03g00041 438 ProSiteProfiles PCI domain profile. 220 404 IPR000717 -
Cmo03g00041 438 Pfam PCI domain 286 400 IPR000717 -
Cmo03g00041 438 Gene3D - 132 434 - -
Cmo03g00041 438 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 333 417 - -
Cmo03g00041 438 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 436 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cmo03g00041 438 PIRSF Transl_init_eIF3e 1 438 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cmo03g00041 438 SMART PINT_4 333 417 IPR000717 -
Cmo03g00041 438 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00041 Cmo-Chr3:751691 Cmo07g01384 Cmo-Chr7:7910102 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00041 K03250 - csv:101205199 853.973