Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00041 | ATGGCGGATTACGATCTAACTCCACGAATTGCTCCGAATCTGGACCGCCATCTTGTTTTCCCTCTCCTTGAGTTTCTTCAAGAGAGGCAGCTTTACCCCGACGAGCAGATCCTCAAGGCCAAGATCGAACTTCTCAACAAAACCAATATGGTTGACTACGCCATGGACATCCATAAGTCGTTGTACCACACTGACGATGTTCCTCAAGATATGGTGGACAGGAGGGCGGAAGTCGTGGGGAGGCTTAAAGCTTTGGAGGAGTCTGCTGCGCCACTTGTTACTTTTCTGCAGAATCCTGCTGCTGTTCAGGAATTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGATTGGTCCAGATCAAATAGAAGCTCTATATCAATATGCCAAATTTCAGTTCGAGTGCGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCTTTGTGCACAAACAGTGAAAGGAGCCTGAGTGCTCTATGGGGAAAATGGGCAGCTGAGATTTTAATGCAGAACTGGGATACTGCTGTTGAAGAGCTTAATCGTTTGAAGGAAATTATTGACTCTAAGGTGAATTTCTCGTCGCATATGAATCAAGTGCAAAGCAGAATATGGTTGATGCATTGGAGCCTCTTCATTTTTTTCAATCATGACAATGGAAGAACACAGATAATTGACCTTTTTAATCAAGATAAGTATTTAAGTGCCATTCAAACCAATGCTCCCCATCTATTACGCTATTTGGCCACTGCATTCATCGTTAACAAAAGGCGGAGGCCACAGTTCAAAGATTTTATCAAGGTTATTCAGCAAGAACAGAATTCCTATAAGGATCCCATCACAGAGTTTTTGACTTGTGTCTATGTCAATTATGATTTTGATGGGGCACAAAAAAAGATGAGAGAGTGTGAAGAAGTTATATTGAATGACCCTTTCCTAGGAAAGAGGCTTGAAGAGGGAAACCTTTCTACCGTTCCTTTGAGGGACGAGTTCTTGGAAAATGCTCGCCTTTTCATCTTTGAGACTTACTGCAGAATACACCAGCGCATTGACATGAGTGTCCTTGCCGAGAAGTTGAACTTAAATTACGAGGAAGCGGAGCGGTGGATTGTTAATCTTGTTCGGACCTCAAAGCTTGATGCCAAGATTGATTCCAAGACGGGAACGGTTATAATGGAACCAAACCAGCCCAACGTATATGAAGAACTGATAGATCACACCAAATCATTATCTGGGCGTACCTACAAGTTAGTCACTCAACTACTAGAGCATGCACAGGCTCAGGCAACCAGATAA | 1317 | 43.05 | MADYDLTPRIAPNLDRHLVFPLLEFLQERQLYPDEQILKAKIELLNKTNMVDYAMDIHKSLYHTDDVPQDMVDRRAEVVGRLKALEESAAPLVTFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKWAAEILMQNWDTAVEELNRLKEIIDSKVNFSSHMNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLSAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRLEEGNLSTVPLRDEFLENARLFIFETYCRIHQRIDMSVLAEKLNLNYEEAERWIVNLVRTSKLDAKIDSKTGTVIMEPNQPNVYEELIDHTKSLSGRTYKLVTQLLEHAQAQATR | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 751691 | 754934 | - | CmoCh03G000410.1 | Cmo03g00041 | 377504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00041 | 438 | SUPERFAMILY | Winged helix DNA-binding domain | 334 | 405 | IPR036390 | - | |
Cmo03g00041 | 438 | SUPERFAMILY | TPR-like | 120 | 193 | IPR011990 | GO:0005515 | |
Cmo03g00041 | 438 | Hamap | Eukaryotic translation initiation factor 3 subunit E [EIF3E]. | 2 | 430 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cmo03g00041 | 438 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 436 | - | - | |
Cmo03g00041 | 438 | SMART | eIF3_N_2 | 5 | 137 | IPR019010 | - | |
Cmo03g00041 | 438 | ProSiteProfiles | PCI domain profile. | 220 | 404 | IPR000717 | - | |
Cmo03g00041 | 438 | Pfam | PCI domain | 286 | 400 | IPR000717 | - | |
Cmo03g00041 | 438 | Gene3D | - | 132 | 434 | - | - | |
Cmo03g00041 | 438 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 333 | 417 | - | - | |
Cmo03g00041 | 438 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E | 1 | 436 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cmo03g00041 | 438 | PIRSF | Transl_init_eIF3e | 1 | 438 | IPR016650 | GO:0003743|GO:0005737|GO:0005852 | |
Cmo03g00041 | 438 | SMART | PINT_4 | 333 | 417 | IPR000717 | - | |
Cmo03g00041 | 438 | Pfam | eIF3 subunit 6 N terminal domain | 5 | 137 | IPR019010 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00041 | Cmo-Chr3:751691 | Cmo07g01384 | Cmo-Chr7:7910102 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00041 | K03250 | - | csv:101205199 | 853.973 |