Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00065 ATGATACATACACTAACACTCTCTGCTTCCATCGCCCTTTCCCCTTTTCCCCTTTCCCACCAAAAAAACACACTCACAATGTCATTTTCTCTGTTCTTTTTCATCTTCCTCTTGATCGATTTCATGTGGGTATCAACATATCCTCCATTGCTCCTCCAGTTTCTGGGGGCTGTTCTTGATGATGAAATCACCATGTCCGCCATTAGAGAGGAGCTTCAAGTTCTTGAGTGGAGCTCCAACATCTCTGAGTACTGTTCTTGGAAGGGTGTTCATTGTGGTTTGAACCATTCCATGGTTGAAGCTCTTGATCTTTCAGGTCATTCTCTTAGAGGTATTCCAACACTGATTTCTAAGCTCAAAGCTCTGAAATGGCTTGATCTATCCTACAATGACTTCCACGGCGACGTCCCGTCGAGTTTCGCAACCTTATCCGAGCTCGAATTCCTTGATTTGTCTTTGAATAAGTTTGATGGTTCGATCCCGCCCGAGTTTGGTGGTCTCAAGAACCTCAAATCATTGAACCTTTCCAATAATCTTCTTGTGGGAGAAATTCCTAATGAGCTTCAAGGATTAGAGAAATTGGAGGATTTTCAAGTTTCTAGCAATAGGTTGAATGGTTCAATTCCAAGTTGGGTTGGAAATTTGAGCCATCTAAGAGTTTTTACAGCTTATGAGAATGACTTTGTTGGTGTAATTCCTGATAATCTCGGTTCGGTTTCCGAGCTCCATGTGTTGAATCTTCATACCAATAGGCTTGAAGGCTCGATTCCTCGAAGTATTTTCGGTTCGGGGAAGCTTGAGATTTTGGTTCTTACACAAAACAGATTGACTGGCCAGCTTCCTGAAGAGATAGGTAACTGTAAAAGCCTTACGAGCGTTCGAATCGGGAACAATGATCTCATTGGTTCGATACCTCCAGCCATTGGCAATGTCAGTAGCCTTGCTTACTTTGAAGTGGATAACAATCACCTTTCGGGCGACATTACGTCTCGGATTTCACGGTGCTCGAATCTCACTCTGCTGAATCTAGCATCAAACGAGTTCACCGGGGTGATTCCTCGTGAACTCGGAGAGCTGATGAATCTGCAGGAGCTTATTCTTTCCGGTAATAGCTTGTATGGCGACATTCCTAGATCGATGCTCCGGTGCAAGAATCTCAACAAGCTCGATTTAAGCAGCAATCGATTCAATGGTACTATTCCTTCAGATATCTGCAATATATCAAGATTGCAGTACTTACTTTTGGAACAGAACTCAATAAAAGGAGAGATACCTAAAGAGATTGGAAAATGTACAAAGCTTCTCGACTTACGACTCGGTAGTAACTACCTAACTGGAAGCGTCCCTTCCGAGATCGGTCGTATTAAGAACTTACAGATAGCTTTGAACTTGAGCTTCAATCATCTAAACGGACCGGTGCCTACGGAGTTGGGGGAACTTGATAAACTGGTTTCTTTAGATTTATCGAACAATCGTCTCTCGGGCGATATCCCGTATGAGCTTAAGGGCATGTTAAGCTTGATAGACGTGAATTTTTCGAATAATTTACTTACTGGTTCGATTCCTTTCTTTGTTCCATTCCAGAAAACTGCAAGTTCCAGTTTTCTGGGAAACAAAGGCCTTTGCGGGGCTCCATTAAGCGTTACGTGTAAAAAATCGATTGGTTCGTACACTCGAGATTACCATCAAAAGGTCTCGTACAAGATCATACTAGCTGTCATCGGTTCCGGGCTGGCTGCTTTCGTATCGGTTAGTATAGTTGTTTTACTTTTTGTGATGAAAGAAAAGCAGGAAAAGGCAGGAAAGTCTTCAAGAGCTGTAGATGATGAAATCATCAAGGATCAACCGACCATAATAGCCGGGAATGTCTTTGACGATAATCTCCGACAGGAGCTAGATCTCGACGCGGCCGTGAAAGCGACGTTTAAGGATTCAAACAAGCTCATATTTGGGACTTTTAGTACTGTTTATAAGGCGGTCTTGCCTTCGGGGATGATCGTATCGGTTAAGAGACTAAAATCGATGGATAAGACGATCGTTCATCATCAAAGTAAGATGATCAGAGAGCTCGAAAGGCTTGGCAAACTGAGCCATGCTAATCTTATGCAACTCATTGGGTATGTTATATACGAAGACGTGGCTCTGTTGCTTCATCGTTACTTACCGAACGGGACATTGGCTCGGCTTCTTCACGAGTATACGAAGCAACCTGAATATGAACCCGATTGGCCCACGAGATTTTCGATCGCCGTTGGAGCAGCCGAAGGGCTAGCTTTCCTTCATCATGTGGCTATAATCCATCTTGATATTTCATCATCCAATATTCTTTTGGATGCAAACTTCAAGCCTTTGGTTGGAGAGGTTGAGATATCAAAACTTTTAGATCCATCAAGAGGCACTGCTAGTATTAGTGCCATTGCAGGTTCATTTGGTTATATTCCACCAGAATATGCGTATACGATGCAAGTTACGGCCCCGGGAAATGTTTATAGCTACGGTGTCGTTTTGCTCGAGATCCTCACAACTAGAATGCCAGTGGATGAGGAGTTTGGTGAAGGAGTAGATTTGGTGAAGTGGGTGCTTAGTGCTCCTTCACGAGGCGAGACACCTGAACAGATACTCGATTCCCGGCTGAGCACGGTGTCGTTCGGGTGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTCTGCACTGATAGCGTACCAGCCAAAAGGCCAAAAATGAAGAAAGTGGTGGAAATGCTTATGGAGATCAAGCAAAATTGA 2772 43.65 MIHTLTLSASIALSPFPLSHQKNTLTMSFSLFFFIFLLIDFMWVSTYPPLLLQFLGAVLDDEITMSAIREELQVLEWSSNISEYCSWKGVHCGLNHSMVEALDLSGHSLRGIPTLISKLKALKWLDLSYNDFHGDVPSSFATLSELEFLDLSLNKFDGSIPPEFGGLKNLKSLNLSNNLLVGEIPNELQGLEKLEDFQVSSNRLNGSIPSWVGNLSHLRVFTAYENDFVGVIPDNLGSVSELHVLNLHTNRLEGSIPRSIFGSGKLEILVLTQNRLTGQLPEEIGNCKSLTSVRIGNNDLIGSIPPAIGNVSSLAYFEVDNNHLSGDITSRISRCSNLTLLNLASNEFTGVIPRELGELMNLQELILSGNSLYGDIPRSMLRCKNLNKLDLSSNRFNGTIPSDICNISRLQYLLLEQNSIKGEIPKEIGKCTKLLDLRLGSNYLTGSVPSEIGRIKNLQIALNLSFNHLNGPVPTELGELDKLVSLDLSNNRLSGDIPYELKGMLSLIDVNFSNNLLTGSIPFFVPFQKTASSSFLGNKGLCGAPLSVTCKKSIGSYTRDYHQKVSYKIILAVIGSGLAAFVSVSIVVLLFVMKEKQEKAGKSSRAVDDEIIKDQPTIIAGNVFDDNLRQELDLDAAVKATFKDSNKLIFGTFSTVYKAVLPSGMIVSVKRLKSMDKTIVHHQSKMIRELERLGKLSHANLMQLIGYVIYEDVALLLHRYLPNGTLARLLHEYTKQPEYEPDWPTRFSIAVGAAEGLAFLHHVAIIHLDISSSNILLDANFKPLVGEVEISKLLDPSRGTASISAIAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRMPVDEEFGEGVDLVKWVLSAPSRGETPEQILDSRLSTVSFGWRKEMLAALKIALLCTDSVPAKRPKMKKVVEMLMEIKQN 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1052989 1057144 + CmoCh03G000650.1 Cmo03g00065 377528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00065 923 SUPERFAMILY L domain-like 83 258 - -
Cmo03g00065 923 Gene3D Phosphorylase Kinase; domain 1 614 720 - -
Cmo03g00065 923 ProSitePatterns Tyrosine protein kinases specific active-site signature. 765 777 IPR008266 GO:0004672|GO:0006468
Cmo03g00065 923 ProSiteProfiles Protein kinase domain profile. 642 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00065 923 Gene3D Ribonuclease Inhibitor 263 553 IPR032675 -
Cmo03g00065 923 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 51 921 - -
Cmo03g00065 923 Pfam Protein kinase domain 644 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00065 923 SUPERFAMILY Protein kinase-like (PK-like) 641 920 IPR011009 -
Cmo03g00065 923 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 51 921 - -
Cmo03g00065 923 Gene3D Transferase(Phosphotransferase) domain 1 721 923 - -
Cmo03g00065 923 Pfam Leucine rich repeat 100 155 IPR001611 GO:0005515
Cmo03g00065 923 Pfam Leucine rich repeat 164 204 IPR001611 GO:0005515
Cmo03g00065 923 Pfam Leucine rich repeat 313 372 IPR001611 GO:0005515
Cmo03g00065 923 SMART LRR_typ_2 143 166 IPR003591 -
Cmo03g00065 923 SMART LRR_typ_2 191 215 IPR003591 -
Cmo03g00065 923 SMART LRR_typ_2 119 142 IPR003591 -
Cmo03g00065 923 SMART LRR_typ_2 239 263 IPR003591 -
Cmo03g00065 923 SMART LRR_typ_2 407 431 IPR003591 -
Cmo03g00065 923 SMART LRR_typ_2 359 383 IPR003591 -
Cmo03g00065 923 SMART LRR_typ_2 167 190 IPR003591 -
Cmo03g00065 923 SMART LRR_typ_2 480 503 IPR003591 -
Cmo03g00065 923 CDD STKc_IRAK 651 920 - -
Cmo03g00065 923 SUPERFAMILY RNI-like 200 523 - -
Cmo03g00065 923 Gene3D Ribonuclease Inhibitor 202 262 IPR032675 -
Cmo03g00065 923 Gene3D Ribonuclease Inhibitor 51 201 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00065 Cmo07g01367 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00969 Cmo-Chr1:6200618 Cmo03g00065 Cmo-Chr3:1052989 2.38E-31 dispersed
Cmo03g00065 Cmo-Chr3:1052989 Cmo06g01278 Cmo-Chr6:9649766 1.14E-60 dispersed
Cmo03g00065 Cmo-Chr3:1052989 Cmo07g01367 Cmo-Chr7:7748464 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74156 PF00069 Pkinase 1.70E-27 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00065 - - csv:101215786 1522.29