Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g00069 | ATGGCTGAAAGAGGAGGAGACCGAGGCGGCTTCGGCAGAGGATTCGGCGGTAGAGGCCGGGGTGGCGACCGTGGCCGTGGACGACGTCGCGCTGGGCGCCGTGATGAAGAGGAAAAATGGGTTCCAGTCACCAAGCTTGGGCGTCTTGTGAAGGAAGGTAAGATTCAATCACTTGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATCGGCCCCAGCCTCAAGGATGAGGTCATGAAGATTATGCCTGTGCAGAAACAGACCCGAGCCGGACAGAGGACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGAAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAGGAGGTGGCGACAGCTATTCGTGGCTCGATTATATTGGCTAAGTTGTCGGTGATCCCTGTTAGGAGGGGATATTGGGGTAACAAGATCGGAAAGCCACATACTGTTCCTTGCAAGGTCACTGGTAAGTGTGGCTCTGTCACTGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTCGCTGCACGGGTTCCCAAGAAGGTGCTTCAGTTTGCTGGTATTGATGATGTTTTCACTTCTTCCCGGGGATCGACCAAGACACTTGGAAACTTCGTGAAGGCTACCTTCGATTGTCTATTGAAAACCTATGGTTTCCTCACACCCGAGTTCTGGAAGGAGACTCGTTTCACGAAATCGCCATTCCAAGAGCACACCGATCTGTTGGCAAAACCGACCGTGAAGGCATTGTTGTTGGACGATGCCGAGAGGATTCTCAGTTTCTGGCAACAAATCTCGGAATCTCCATCTAATCTTCTTCTCTTCGCTTTTGAATCTCAATTTCACGATCTTCACCTCTCTGTTGTTCATTTCGGTTTTGATTTGGGGATGGGAACCCCGGAATTCCCTAATCTCGGGAAGCATTGCAACTTGGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCGCCAGGTCTTTTGTTTGGAGCATCGTAGCTACAATAGACATAGTTGTCCGAAAGCAGATAGACGGGATGTCACCGTCGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCGTCCCAGATCAAGATCCCAACATTACATGGGAGATACATGTTAACACTGAATGTGACCCATCAAATTATGAAAAAGTCACAAAGAAGAAAAAATGCCCTGTGCCTGGCTGTAGGGAGTCGTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTTGGTAGACCATTGTTTGAAACACCGTTTTGGTCTCGACCATAAGTGTCCTGGTCCGAAGAAACCCGAACCAGCAGGCTTTTCTTTTGTTGGTGTTTTAAGTAGAAGTAAACAAGAAGAGAATGGGTCTAAGAAAGCATTGCCTACTACAGCTTCCTCTAATTGGACAACAGCCCTCCTTAATGTAGCCTCGTCTTTTAAAGCCTCATGGAAAGCAACAGGCAACAACAGCAATGGAAATGGACATGTTGAGCAATGTCCACAATGCAGTGCTAAGTTTTCGATGGTTTCGTCTCTAGTCGAGCATGTAAAAAAAGTCCATGAAAGCGGTGTCAATCGACCTGGGGCAAAGAAGGCAGTAATCGATGCGTGTCCAAAGTGTAGCAGAGGGTTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAAGGATCATGGTGGTACTTCAAGAGCTTGA | 1740 | 48.56 | MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKALLLDDAERILSFWQQISESPSNLLLFAFESQFHDLHLSVVHFGFDLGMGTPEFPNLGKHCNLEDCKQIDFLPFTCDCCRQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLVPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRESLTFSNTIKCRDCLVDHCLKHRFGLDHKCPGPKKPEPAGFSFVGVLSRSKQEENGSKKALPTTASSNWTTALLNVASSFKASWKATGNNSNGNGHVEQCPQCSAKFSMVSSLVEHVKKVHESGVNRPGAKKAVIDACPKCSRGFIDPVALVEHIEKDHGGTSRA | 579 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1065748 | 1071174 | - | CmoCh03G000690.1 | Cmo03g00069 | 377532 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g00069 | 579 | SMART | c2h2final6 | 406 | 436 | IPR013087 | - | |
Cmo03g00069 | 579 | SMART | c2h2final6 | 512 | 535 | IPR013087 | - | |
Cmo03g00069 | 579 | SMART | c2h2final6 | 550 | 573 | IPR013087 | - | |
Cmo03g00069 | 579 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cmo03g00069 | 579 | SUPERFAMILY | dsRNA-binding domain-like | 78 | 147 | - | - | |
Cmo03g00069 | 579 | Gene3D | - | 307 | 365 | IPR035896 | - | |
Cmo03g00069 | 579 | ProSiteProfiles | S5 double stranded RNA-binding domain profile. | 82 | 145 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Cmo03g00069 | 579 | PANTHER | RIBOSOMAL S SUBUNIT | 1 | 268 | IPR000851 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Cmo03g00069 | 579 | TIGRFAM | uS5_euk_arch: ribosomal protein uS5 | 35 | 242 | IPR005711 | GO:0003735|GO:0006412|GO:0015935 | |
Cmo03g00069 | 579 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 158 | 238 | IPR020568 | - | |
Cmo03g00069 | 579 | Gene3D | - | 145 | 238 | IPR014721 | - | |
Cmo03g00069 | 579 | ProSiteProfiles | Zinc finger AN1-type profile. | 314 | 362 | IPR000058 | GO:0008270 | |
Cmo03g00069 | 579 | Pfam | Ribosomal protein S5, C-terminal domain | 166 | 238 | IPR005324 | GO:0003735|GO:0005840|GO:0006412 | |
Cmo03g00069 | 579 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 514 | 535 | IPR013087 | - | |
Cmo03g00069 | 579 | Pfam | Ribosomal protein S5, N-terminal domain | 82 | 146 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Cmo03g00069 | 579 | ProSiteProfiles | Zinc finger AN1-type profile. | 402 | 452 | IPR000058 | GO:0008270 | |
Cmo03g00069 | 579 | ProSitePatterns | Ribosomal protein S5 signature. | 99 | 131 | IPR018192 | - | |
Cmo03g00069 | 579 | Gene3D | - | 388 | 456 | IPR035896 | - | |
Cmo03g00069 | 579 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 552 | 573 | IPR013087 | - | |
Cmo03g00069 | 579 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 512 | 535 | IPR013087 | - | |
Cmo03g00069 | 579 | Pfam | AN1-like Zinc finger | 320 | 358 | IPR000058 | GO:0008270 | |
Cmo03g00069 | 579 | Pfam | AN1-like Zinc finger | 408 | 448 | IPR000058 | GO:0008270 | |
Cmo03g00069 | 579 | Gene3D | Classic Zinc Finger | 488 | 578 | - | - | |
Cmo03g00069 | 579 | SUPERFAMILY | AN1-like Zinc finger | 307 | 365 | IPR035896 | - | |
Cmo03g00069 | 579 | Gene3D | - | 39 | 144 | - | - | |
Cmo03g00069 | 579 | SUPERFAMILY | AN1-like Zinc finger | 400 | 450 | IPR035896 | - | |
Cmo03g00069 | 579 | PANTHER | 40S RIBOSOMAL PROTEIN S2-1-RELATED | 1 | 268 | - | - | |
Cmo03g00069 | 579 | SMART | AN1_Zf_4 | 320 | 359 | IPR000058 | GO:0008270 | |
Cmo03g00069 | 579 | SMART | AN1_Zf_4 | 408 | 449 | IPR000058 | GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00069 | Cmo-Chr3:1065748 | Cmo07g01365 | Cmo-Chr7:7736340 | 0 | dispersed | |
Cmo03g00068 | Cmo-Chr3:1065372 | Cmo03g00069 | Cmo-Chr3:1065748 | 2.64E-15 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9357 | PF03719 | Ribosomal_S5_C | 3.10E-23 | CL0329 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g00069 | K02981 | - | cpep:111803780 | 498.049 |