Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00069 ATGGCTGAAAGAGGAGGAGACCGAGGCGGCTTCGGCAGAGGATTCGGCGGTAGAGGCCGGGGTGGCGACCGTGGCCGTGGACGACGTCGCGCTGGGCGCCGTGATGAAGAGGAAAAATGGGTTCCAGTCACCAAGCTTGGGCGTCTTGTGAAGGAAGGTAAGATTCAATCACTTGAGCAGATTTACCTTCACTCTCTCCCAATCAAGGAGCACCAGATCGTCGATACTCTCATCGGCCCCAGCCTCAAGGATGAGGTCATGAAGATTATGCCTGTGCAGAAACAGACCCGAGCCGGACAGAGGACTAGGTTTAAGGCCTTCGTTGTCGTCGGCGACGGAAATGGCCATGTCGGATTGGGAGTTAAGTGCAGCAAGGAGGTGGCGACAGCTATTCGTGGCTCGATTATATTGGCTAAGTTGTCGGTGATCCCTGTTAGGAGGGGATATTGGGGTAACAAGATCGGAAAGCCACATACTGTTCCTTGCAAGGTCACTGGTAAGTGTGGCTCTGTCACTGTACGTATGGTCCCTGCTCCTCGTGGTGCTGGTATTGTCGCTGCACGGGTTCCCAAGAAGGTGCTTCAGTTTGCTGGTATTGATGATGTTTTCACTTCTTCCCGGGGATCGACCAAGACACTTGGAAACTTCGTGAAGGCTACCTTCGATTGTCTATTGAAAACCTATGGTTTCCTCACACCCGAGTTCTGGAAGGAGACTCGTTTCACGAAATCGCCATTCCAAGAGCACACCGATCTGTTGGCAAAACCGACCGTGAAGGCATTGTTGTTGGACGATGCCGAGAGGATTCTCAGTTTCTGGCAACAAATCTCGGAATCTCCATCTAATCTTCTTCTCTTCGCTTTTGAATCTCAATTTCACGATCTTCACCTCTCTGTTGTTCATTTCGGTTTTGATTTGGGGATGGGAACCCCGGAATTCCCTAATCTCGGGAAGCATTGCAACTTGGAAGATTGTAAGCAGATCGATTTCTTGCCCTTTACTTGCGATTGCTGTCGCCAGGTCTTTTGTTTGGAGCATCGTAGCTACAATAGACATAGTTGTCCGAAAGCAGATAGACGGGATGTCACCGTCGTCATTTGTCCGCTGTGTGCCAAAGGAGTTCGTCTCGTCCCAGATCAAGATCCCAACATTACATGGGAGATACATGTTAACACTGAATGTGACCCATCAAATTATGAAAAAGTCACAAAGAAGAAAAAATGCCCTGTGCCTGGCTGTAGGGAGTCGTTAACGTTTTCAAACACGATCAAGTGTCGGGACTGCTTGGTAGACCATTGTTTGAAACACCGTTTTGGTCTCGACCATAAGTGTCCTGGTCCGAAGAAACCCGAACCAGCAGGCTTTTCTTTTGTTGGTGTTTTAAGTAGAAGTAAACAAGAAGAGAATGGGTCTAAGAAAGCATTGCCTACTACAGCTTCCTCTAATTGGACAACAGCCCTCCTTAATGTAGCCTCGTCTTTTAAAGCCTCATGGAAAGCAACAGGCAACAACAGCAATGGAAATGGACATGTTGAGCAATGTCCACAATGCAGTGCTAAGTTTTCGATGGTTTCGTCTCTAGTCGAGCATGTAAAAAAAGTCCATGAAAGCGGTGTCAATCGACCTGGGGCAAAGAAGGCAGTAATCGATGCGTGTCCAAAGTGTAGCAGAGGGTTCATCGATCCTGTTGCCCTCGTCGAGCATATTGAGAAGGATCATGGTGGTACTTCAAGAGCTTGA 1740 48.56 MAERGGDRGGFGRGFGGRGRGGDRGRGRRRAGRRDEEEKWVPVTKLGRLVKEGKIQSLEQIYLHSLPIKEHQIVDTLIGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGSIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFTKSPFQEHTDLLAKPTVKALLLDDAERILSFWQQISESPSNLLLFAFESQFHDLHLSVVHFGFDLGMGTPEFPNLGKHCNLEDCKQIDFLPFTCDCCRQVFCLEHRSYNRHSCPKADRRDVTVVICPLCAKGVRLVPDQDPNITWEIHVNTECDPSNYEKVTKKKKCPVPGCRESLTFSNTIKCRDCLVDHCLKHRFGLDHKCPGPKKPEPAGFSFVGVLSRSKQEENGSKKALPTTASSNWTTALLNVASSFKASWKATGNNSNGNGHVEQCPQCSAKFSMVSSLVEHVKKVHESGVNRPGAKKAVIDACPKCSRGFIDPVALVEHIEKDHGGTSRA 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1065748 1071174 - CmoCh03G000690.1 Cmo03g00069 377532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00069 579 SMART c2h2final6 406 436 IPR013087 -
Cmo03g00069 579 SMART c2h2final6 512 535 IPR013087 -
Cmo03g00069 579 SMART c2h2final6 550 573 IPR013087 -
Cmo03g00069 579 MobiDBLite consensus disorder prediction 1 37 - -
Cmo03g00069 579 SUPERFAMILY dsRNA-binding domain-like 78 147 - -
Cmo03g00069 579 Gene3D - 307 365 IPR035896 -
Cmo03g00069 579 ProSiteProfiles S5 double stranded RNA-binding domain profile. 82 145 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo03g00069 579 PANTHER RIBOSOMAL S SUBUNIT 1 268 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo03g00069 579 TIGRFAM uS5_euk_arch: ribosomal protein uS5 35 242 IPR005711 GO:0003735|GO:0006412|GO:0015935
Cmo03g00069 579 SUPERFAMILY Ribosomal protein S5 domain 2-like 158 238 IPR020568 -
Cmo03g00069 579 Gene3D - 145 238 IPR014721 -
Cmo03g00069 579 ProSiteProfiles Zinc finger AN1-type profile. 314 362 IPR000058 GO:0008270
Cmo03g00069 579 Pfam Ribosomal protein S5, C-terminal domain 166 238 IPR005324 GO:0003735|GO:0005840|GO:0006412
Cmo03g00069 579 ProSitePatterns Zinc finger C2H2 type domain signature. 514 535 IPR013087 -
Cmo03g00069 579 Pfam Ribosomal protein S5, N-terminal domain 82 146 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cmo03g00069 579 ProSiteProfiles Zinc finger AN1-type profile. 402 452 IPR000058 GO:0008270
Cmo03g00069 579 ProSitePatterns Ribosomal protein S5 signature. 99 131 IPR018192 -
Cmo03g00069 579 Gene3D - 388 456 IPR035896 -
Cmo03g00069 579 ProSitePatterns Zinc finger C2H2 type domain signature. 552 573 IPR013087 -
Cmo03g00069 579 ProSiteProfiles Zinc finger C2H2 type domain profile. 512 535 IPR013087 -
Cmo03g00069 579 Pfam AN1-like Zinc finger 320 358 IPR000058 GO:0008270
Cmo03g00069 579 Pfam AN1-like Zinc finger 408 448 IPR000058 GO:0008270
Cmo03g00069 579 Gene3D Classic Zinc Finger 488 578 - -
Cmo03g00069 579 SUPERFAMILY AN1-like Zinc finger 307 365 IPR035896 -
Cmo03g00069 579 Gene3D - 39 144 - -
Cmo03g00069 579 SUPERFAMILY AN1-like Zinc finger 400 450 IPR035896 -
Cmo03g00069 579 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 268 - -
Cmo03g00069 579 SMART AN1_Zf_4 320 359 IPR000058 GO:0008270
Cmo03g00069 579 SMART AN1_Zf_4 408 449 IPR000058 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00069 Cmo-Chr3:1065748 Cmo07g01365 Cmo-Chr7:7736340 0 dispersed
Cmo03g00068 Cmo-Chr3:1065372 Cmo03g00069 Cmo-Chr3:1065748 2.64E-15 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9357 PF03719 Ribosomal_S5_C 3.10E-23 CL0329 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00069 K02981 - cpep:111803780 498.049