Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00070 ATGACGATCACACCCAAGATTTCTATCAACGATGGCAACTTGGTGGTTCATGGGAAGACCATACTGACTGGCGTGCCTGACAACATTGTGCTGACTCCAGGATCAGGCCTTGGACTCGTTGCTGGCGCATTCATTGGTGCCACTGCTTCCAACAGTAAAAGTCTGCACGTTTTCCCTGTGGGTGTCCTAGAGGGTCAGCGCTTCCTGTGTTGTTTCCGTTTCACGTTATGGTGGATGACACAGAGAATGGGAACATCTGGGAGAGACATCCCTTTTGAGACACAATTCCTGCTTATGGAGAGCAAGGGAACCGAAGGGGAGGATCCTGATAATTCATCCACCATCTACACTGTCTTCCTTCCTCTCCTTGAAGGTCAATTCCGTGCTGCCCTGCAGGGCAATGAAAAGAATGAGATGGAGATTTGCCTCGAGAGCGGAGATAATTCTGTTGAGACAAACCAAGGACTTTCTCTTGTCTATATGCATGCTGGGACCAATCCTTTTGAAGTTATCAATCAAGCAGTGAAGGCTGTTGAAAAGCATATGCAAACTTTTCTACACCGAGAGAAGAAAAAGTTACCTTCCTTCCTTGACTGGTTTGGTTGGTGTACTTGGGATGCTTTTTACACCGAGGTCACCGCTGAGGGTGTTATGGAAGGTCTTGAAAGCCTATCAGAGGGAGGGGCACCTCCAAAATTCTTGATCATAGATGATGGTTGGCAACAGATTGAGAGCAAACCAAGGGATGCTGATTGTGTTGTACAAGAAGGAGCACAGTTTGCGAGTAGGCTTTCTGGAATAAAAGAAAACCACAAGTTTCAGAAAAATGAGAAGAACAATGAGCAGCAAGTCCCAGGCCTGAAGGTGGTTGTTGATGATGCCAAGCAAAAGCACAATGTGAAATTTGTGTATGCGTGGCATGCTTTAGCTGGTTATTGGGGTGGAGTGAAGCCAGCAGGTCCAGGGCTGGAGCACTATGAGTCTGCTTTGGCATACCCAGTCCAGTCACCGGGCATGTTGAGCAACCAACCAGACATAGTTGTAGACAGCCTTGCTGTTCATGGGATTGGCCTTGTTCATCCAAAGAAAGTCTTCAATTTCTATAACGAGCTTCATTCCTACTTGGCTTCATGTGGTATCGATGGTGTAAAGGTCGATGTGCAAAACATCATCGAGACCCTCGGTGCTGGTCATGGTGGTCGGGTTGCGCTTACTCGTAGCTACCATCAGGCCCTCGAAGCGTCAATTGCTCGAAACTTTTCCGACAATGGTTGCATTGCCTGTATGTGCCACAACACTGATGGTCTCTACAGCGCCAAACAGACTGCGGTTATGAGAGCTTCTAATGACTATTACCCTCGTGATCCTGCCTCCCACACCATTCATATCTCTTCTGTAGCTTACAATTCTCTTTTCCTTGGAGAGTTCATGCAGCCTGACTGGGATATGTTCCATGGTGCTGGCTGGTGCAGGATCACGAAGAAGACTCGCATTCACGACGAGTCTCCAGGTACCCTCACCACCTCTGTTCGTGCGGCCGACGTCGATGCTATTTCCCAAGTTGCCAGTGCCGATTGGAAGGGCGATTCTATCGTTTATGCTTATCGATCAGTGACCCTCAAAGCTCTAGAATATGATCTTTTCCATATTTCTCCTCTAACGGACATCACCTCAAACATCTCGTTTGCACCAATCGGTCTACTCGACATGTTCAACATCGGTGGTGCCATCGAGCAAGTCGATATCCAAGTGATCGAACCATTACCAGAGTTCGACGGTGAAATTGCCTCCGAGCTAACCGGCTCTCTCCCCAATGATCGACCTCCAACCGCCACAATCACCTTGAAAGCTCGAGGTTGTGGAAGGTTTGGTGTATACTCATCTCAACGACCTCTAAAATGCAGTGTGGACAAGACAGATACCGACTTTGTGTACGACGAGGCAACGGGTCCACTGAGAAGGGAGTATCAGAAAACCCAATCAAAATCAGACATTCAGATAAGAACAGGAAAAATGGATCGAGGAGGATCTTCGATTGAACCAGCGGCCATGGAGGTCGATCCAAATTCTGGGAAATCGTCGAAACAGATTGGGGGCGGCCAGGTTTGTCAGATCTGCAGCGATTCCGTCGGTACGACGGCTGACGGCGAGCCGTTTGTTGCGTGTGATGTTTGTGCGTTTCCGGTTTGCCGTCCCTGTTACGAGTACGAGAGGAAAGACGGGAATCAGTCTTGCCCTCAATGCAAGACCAAATACAAGTGGCATAAAGGAAGTCCTCCGGTTCATGGAGAGGCAGTGGAAGATGGTGATGGTAATGGAGCGGAAGGGGCGCAAGAAAGGCATCATAAGAAGCCAGAGCGCACGCTTAGCTGGGATACCAATTATGATAAGGAGGGATCGTTTAATCACATTCCTTTGCTCACCACTGGACGATCTGTTTCTGGAGAACTGTCTGCTGCATCTCCCGAGCGGCTCTCCATGGCATCGCCTGAAAGTGGGAGTCGCGCTAACTATAGAATCATGGATCAATCGAGAGACTCGGGATCGGCTAGGTTTGGCAATGTAGCCTGGAAAGAGAGGATAGATAGTTGGAAGGTGAAGCAGGACAAGAGTGTGCCGCCGATGAGTGTTAGTCATGCTCCTTCTGAAGGGAGGGGTGGTGCTGATTTTGATGCTAGCACTGATGTCATGATCGATGATTCTTTACTGAATGATGAAGCTCGTCAGCCTCTATCGAGGAAGGTTTCTATTCCGTCCTCTAGGATTAACCCTTATAGGATGGTCATAGTTCTGCGGCTTATTATTCTTTGCATCTTCTTGCACTACCGGATTACAAATCCAGTTCCGAATGCCTTTGCTCTGTGGTTAATATCAGTGATTTGTGAGATATGGTTTGCTGTATCTTGGATTTTGGATCAGTTCCCCAAATGGCTTCCGGTCAACCGGGAGACATATCTTGATAGGCTTGCTCTACGATATGATCGTGAAGGAGAGCCTTCTCAGTTGGCTGCTGTCGACATATTTGTCAGTACTGTTGACCCTCTGAAAGAACCTCCCCTCGTCACAGCCAATACGGTCCTATCGATTCTCTCTGTGGACTATCCAGTTGATAAGGTTTCTTGCTATGTATCAGATGATGGAGCTGCTATGTTAACATTTGAAGCCTTGTCTGAAACATCAGAATTTGCAAGAAAATGGGTTCCTTTCTCCAAGAAGTACAGCATTGAGCCACGAGCACCCGAGTGGTATTTTTCTCAGAAGATCGATTACTTAAAGGACAAGGTTCATCCATCATTCGTGAAGGATCGGAGAGCGATGAAGGTAGTAACTCCAGATTCCTCTATATCATTTTCTTTCATAAAAGTTACTTTATCATCTCCTGACCGTGCTTTTGTGTTACAGAGAGAATACGAGGAGTTTAAAATCCGTATCAATGGACTCGTTGCTAAGGCACAGAAAGTTCCTGATGAAGGGTGGGTCATGCAAGACGGTACGCCATGGCCGGGAAATAACACTAGAGATCATCCAGGAATGATACAGGTTTTCTTAGGCCACAGTGGAGGGCTCGATACTGAGGGTAACGAGCTTCCACGTCTGGTTTACGTTTCTCGTGAGAAGCGTCCTGGTTTCCAACATCACAAAAAGGCTGGTGCTATGAATGCTCTTGTTCGGGTATCTGCCGTGCTTACCAATGGACCCTTCTTGTTAAATCTTGATTGTGATCACTACATAAACAACAGTAAAGCGTTGCGGGAAGCTATGTGTTTTATGATGGATCCTAACCTTGGAAAATCAGTTTGCTATGTTCAGTTTCCACAGAGGTTCGATGGGATTGATAGAAATGATCGATATGCTAACCGAAACACCGTTTTCTTCGATATCAATCTTCGAGGCTTGGACGGTATTCAAGGTCCAGTTTATGTGGGAACGGGATGTGTTTTCAATCGAACTGCGTTGTATGGCTACGAACCCCCTCTCAAGCCCAAGCATAAAAAACCAGGGCTATTCTCGAGTTGCTTTGGGAAGTCGAAAAAGAAAAGTTCTAAATCAAAAAGAAAAGATTCTGATAAGAAGCAAACGAGTAAAAATGTCGATCCCACCGTGCCAATATTCAACCTCGAGGATATTGAGGAAGGAGTTGAAGGTGCCGGGTTTGATGATGAGAAGTCGTTGCTAATGTCGCAAATGAGCCTGGAGAAGAGGTTCGGTCAATCGGCTGTATTTGTTGCTTCCACGCTAATGGAGAATGGAGGCGTGCCGCAGTCTGCCACTCCGGAATCGCTCCTTAAAGAAGCAATTCATGTCATCAGTTGTGGATACGAGGATAAAACAGACTGGGGAAGTGAAATCGGATGGATCTACGGTTCGGTCACAGAAGATATTTTGACAGGGTTCAAGATGCACGCCCGTGGTTGGAGATCGATCTATTGCATACCGGACCGTCCTGCATTTAAAGGGTCTGCTCCCATTAATCTTTCTGATCGTCTTAACCAAGTGCTTCGGTGGGCGTTAGGTTCGGTCGAAATTCTTTTCAGTCGGCATTGTCCTATGTGGTACGGTTATGGTGGACGGTTGAAATGGCTCGAGCGATTTGCTTATGTTAACACTACCATTTACCCAATAACATCAATTCCTCTTCTTGCCTATTGTACCTTACCTGCAATATGTCTGCTCACTGGAAAGTTCATCATTCCTCAGATCAGTAATCTTGCCAGCATTTGGTTCATTTCTCTGTTTCTTTCCATCTTTGCTACTGGTATTCTGGAAATGAGATGGAGCGGTGTCGGGATCGATGAATGGTGGAGAAACGAGCAGTTCTGGGTTATCGGAGGTGTGTCGGCCCATCTGTTTGCCGTGTTCCAAGGTCTTCTTAAAGTTCTTGCTGGAATTGATACCAACTTCACGGTTACTTCAAAAGCATCTGATGAAGATGGAGATTTTGCTGAGCTCTACTTGTTCAAGTGGACAACTCTTCTCATTCCCCCAACTACTCTCCTGATTATCAACATAGTAGGAGTTGTTGCTGGAATTTCCTATGCCATTAACAGTGGCTATCAATCTTGGGGTCCCCTTTTCGGCAAGCTGTTCTTCGCGTTCTGGGTGATTATTCATCTCTATCCCTTCCTCAAGGGTCTGATGGGTCGCCAAAACCGAACTCCCACGATCGTGGTTGTCTGGTCCATCCTCCTTGCCTCAATCTTCTCCCTTTTATGGGTTCGGATCGATCCCTTCACAACTCGGGTAACTGGTCCTGACGTCGAACAATGTGGAATCAACTGCTAA 5283 46.85 MTITPKISINDGNLVVHGKTILTGVPDNIVLTPGSGLGLVAGAFIGATASNSKSLHVFPVGVLEGQRFLCCFRFTLWWMTQRMGTSGRDIPFETQFLLMESKGTEGEDPDNSSTIYTVFLPLLEGQFRAALQGNEKNEMEICLESGDNSVETNQGLSLVYMHAGTNPFEVINQAVKAVEKHMQTFLHREKKKLPSFLDWFGWCTWDAFYTEVTAEGVMEGLESLSEGGAPPKFLIIDDGWQQIESKPRDADCVVQEGAQFASRLSGIKENHKFQKNEKNNEQQVPGLKVVVDDAKQKHNVKFVYAWHALAGYWGGVKPAGPGLEHYESALAYPVQSPGMLSNQPDIVVDSLAVHGIGLVHPKKVFNFYNELHSYLASCGIDGVKVDVQNIIETLGAGHGGRVALTRSYHQALEASIARNFSDNGCIACMCHNTDGLYSAKQTAVMRASNDYYPRDPASHTIHISSVAYNSLFLGEFMQPDWDMFHGAGWCRITKKTRIHDESPGTLTTSVRAADVDAISQVASADWKGDSIVYAYRSVTLKALEYDLFHISPLTDITSNISFAPIGLLDMFNIGGAIEQVDIQVIEPLPEFDGEIASELTGSLPNDRPPTATITLKARGCGRFGVYSSQRPLKCSVDKTDTDFVYDEATGPLRREYQKTQSKSDIQIRTGKMDRGGSSIEPAAMEVDPNSGKSSKQIGGGQVCQICSDSVGTTADGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKWHKGSPPVHGEAVEDGDGNGAEGAQERHHKKPERTLSWDTNYDKEGSFNHIPLLTTGRSVSGELSAASPERLSMASPESGSRANYRIMDQSRDSGSARFGNVAWKERIDSWKVKQDKSVPPMSVSHAPSEGRGGADFDASTDVMIDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLIILCIFLHYRITNPVPNAFALWLISVICEIWFAVSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFSKKYSIEPRAPEWYFSQKIDYLKDKVHPSFVKDRRAMKVVTPDSSISFSFIKVTLSSPDRAFVLQREYEEFKIRINGLVAKAQKVPDEGWVMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHKKPGLFSSCFGKSKKKSSKSKRKDSDKKQTSKNVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPDRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPMWYGYGGRLKWLERFAYVNTTIYPITSIPLLAYCTLPAICLLTGKFIIPQISNLASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIINIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1074167 1089085 - CmoCh03G000700.1 Cmo03g00070 377533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00070 1760 MobiDBLite consensus disorder prediction 1333 1365 - -
Cmo03g00070 1760 Gene3D Aldolase class I 198 505 IPR013785 -
Cmo03g00070 1760 CDD mRING-HC-C4C4_CesA_plant 701 751 - -
Cmo03g00070 1760 MobiDBLite consensus disorder prediction 756 794 - -
Cmo03g00070 1760 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1151 1323 IPR029044 -
Cmo03g00070 1760 ProSiteProfiles Zinc finger RING-type profile. 703 749 IPR001841 -
Cmo03g00070 1760 Pfam Zinc-binding RING-finger 699 769 IPR027934 -
Cmo03g00070 1760 Pfam Raffinose synthase or seed imbibition protein Sip1 7 485 IPR008811 -
Cmo03g00070 1760 Pfam Raffinose synthase or seed imbibition protein Sip1 486 651 IPR008811 -
Cmo03g00070 1760 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1019 1562 IPR029044 -
Cmo03g00070 1760 Pfam Cellulose synthase 1132 1753 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo03g00070 1760 Pfam Cellulose synthase 1005 1107 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo03g00070 1760 PANTHER CELLULOSE SYNTHASE 694 1760 - -
Cmo03g00070 1760 MobiDBLite consensus disorder prediction 773 793 - -
Cmo03g00070 1760 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 694 1760 - -
Cmo03g00070 1760 SUPERFAMILY RING/U-box 692 770 - -
Cmo03g00070 1760 SUPERFAMILY (Trans)glycosidases 196 490 IPR017853 -
Cmo03g00070 1760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 776 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00070 Cmo07g01364 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00070 Cmo-Chr3:1074167 Cmo08g00518 Cmo-Chr8:3241989 0 dispersed
Cmo03g00070 Cmo-Chr3:1074167 Cmo07g01364 Cmo-Chr7:7723464 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00070 K10999 - csv:101211779 2076.6