Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00082 ATGTTTATTGCAGGAAGTCCGTCGAGTTCTTTGTCACCTCTGCCATGGTCTGCAAGGTTAAAAATTGCTCAAGGAGCTGCAAGGGGTTTGGCCTACATTCATGAATTCGGTGCCCGAAAATACGTACATGGAAACATAAAATCGACAAAAATCCTTCTCGACGATGATTTCGAGCCTTACATTTCAGGTTTTGGACTTAGTCGTCTCGGCCAAGGAGCACCTAAGTTCACTCCAACCTCCTCCAAGAAGTTGAGCTCAAACCAGAACATGATAAGCTCAATCATGGGGTCAAGCATTTCGAGTCCCTCGGCGATGTACTTGGCGCCAGAGGTTCGTGAGTTTGGAGGGAAGTACACGCAGAAATGCGACGTGTACTCGTTCGGGATTGTGATTCTTGAGCTTTTGAGCGGTAGATTGGCCGATGTCGTATCGGAAAATGATGGGAAGGGGTTGGAATGTTTCGTGAGAAAGGCGTTTCAAGAAGAGCGGCCATTGACTGATGTTATCGACCCTGCACTTGTGCCTGAGATTTATGCTAAGAAACAAGTAGTTTCGATGTTTCATATTGCACTGAATTGCACCGAGCTTGATCCCGAGCTGCGTCCGAGAATGAGAATGGTGTCGGAGTGTCTCGATCGAATCAAATATCAGTGA 654 46.79 MFIAGSPSSSLSPLPWSARLKIAQGAARGLAYIHEFGARKYVHGNIKSTKILLDDDFEPYISGFGLSRLGQGAPKFTPTSSKKLSSNQNMISSIMGSSISSPSAMYLAPEVREFGGKYTQKCDVYSFGIVILELLSGRLADVVSENDGKGLECFVRKAFQEERPLTDVIDPALVPEIYAKKQVVSMFHIALNCTELDPELRPRMRMVSECLDRIKYQ 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1229965 1230618 - CmoCh03G000820.1 Cmo03g00082 377545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00082 217 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00082 217 Pfam Protein kinase domain 21 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00082 217 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 217 - -
Cmo03g00082 217 SUPERFAMILY Protein kinase-like (PK-like) 12 211 IPR011009 -
Cmo03g00082 217 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 217 - -
Cmo03g00082 217 Gene3D Transferase(Phosphotransferase) domain 1 6 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00082 Cmo-Chr3:1229965 Cmo04g01922 Cmo-Chr4:9813402 9.09E-62 dispersed
Cmo03g00082 Cmo-Chr3:1229965 Cmo07g01352 Cmo-Chr7:7651621 2.80E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74158 PF00069 Pkinase 1.30E-12 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00082 - - cmos:111435498 395.971