Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00092 ATGGCTTCCCTCTTGAAACCGCCATTGTTGCTCTCATTAGTCTTTTCTTTCTTCATTTTGTGTTCTTCATCCTCTGAGGAATCGACCCTTTTGACCTTCAAAGCTTCCATTAACGATTCAACGAACTCTCTCTCGAATTGGGTTTCTTCTTCTGCAACCCATTTCTGTAATTGGACTGGAATTTCTTGTACGAGTTCTTCTCCTTCATCGCTTTCGATTGCCGCCATTGTTCTTCAGGGTTTGAACCTTTCCGGTGAAATTTCATCTTCCGTTTGCGAACTCCCTCGTTTAACCCATCTTAATCTCGCTGATAATCGCTTCAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCAGCGCGTTGGAGAGTTTGAATCTGAGTAATAATCTCATTTGGGGAACAATCCCAGATCAGATTTCTCTGTTTGATTCTCTACGTGTTCTTGATTTTGCGAGGAATCACATCGAAGGGAAGATCCCTGAAGGCATTGGGGCTTTGAAGAATCTTCAAACTCTTAATCTGAGGAACAACTTGATATCTGGTAGAGTACCCTCTGTTATCTTTCATAATCTTACTGAACTTGTTGTTCTTGATTTGTCTGAAAATGCTTATCTGATGAGTGATATTCCTAATGAGATTGGTAAGCTTGAGAAGCTTGAGGAGCTATGGCTTCAAAGCTCTGGTTTCTATGGCGAAATCCCTTATTCTTTGTTGGGTTTGAAGAGTTTGAATGTTTTGGATCTTTCTCAGAACAATCTCACTGGAAAACTCCCTGAAATGATGGGTTCTTCTTTGAAGAATTTGGTGTTCTTTGATGTTTCTGAGAATAAACTCATGGGGGCTTTCCCAAATGGGTTTTGTAGTGGAGAATCCCTTGTGAGTTTTAGTGTTCATACCAATTTTTTCACTGGGAATTTGCCTAATTCCTTGAATAAATGCTTGAATCTGGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCAGGGGATTTCCCTGAATCCTTATGGTCATTGCCTAAGATTAAGCTAATTAGAGCTGAAAACAATGGTTTCTCTGGTGAAGTTCCGGAGTTTATATCAATGGCTACTCATCTTGAGCAAGTTCAGCTTGATAACAACAGTTTTTCGAGTAAGATACCCCAAGGTCTCGGATCGATTCGAAGCTTATATCGATTCTCTGCCTCGCTTAATCGTTTTCATGGTGATCTGCCACCGAACTTCTGTGATTCTCCATTGATGAGTATTATTAATCTGTCTCATAATTCACTTTCGGGTCGAATTCCCGAGCCGAAGAACTGCAAGAAACTTGTCTCATTGTCCTTAGCAGGGAATAGTTTTAGTGGAGAGATACCTAGTTCCCTTGCAGATCTACCTGTGTTGACTTATCTTGATCTTTCTGATAACAATCTCACTGGCTCGATCCCTCAACGACTCGAGAACTTAAAGTTTGCGCTGTTTAATGTTTCGTTTAATCAACTATCGGGCGCTGTTCCGTTTTCTTTGATTTCTGGATTGCCAGCTTCTTTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGTTTGCAAACTCCTTGTTCACAAGGCCATCCAGTAAGTGATATGTCTGGACTTAACAAAATGACATGTGCCCTTGTCTCTATAGCTTGTGTTCTCGGAGTTATGAGCTTAGCTGCTGGGTTCGTTCTGTATTACCGGTCGTTCAAATCGAAATCCCGTGTCGATAACTGGCATTCGGTCTACTTCTACCCTCTTAGAATCAGTGAGCACGCGTTGATCATGGGGATGAATGAGAAAACTGCACAAGGATGTGAGGGAGCTTTTGGACAAGTGTTTGTTTTAAGCTTACCGAGCCGTGAACTGATTGCCGTGAAGAAACTTGTTAAGTTCGGGAGTCGTTCGTGGAAGTCGTTGAAAGCCGAGGTCAAGACGTTGGCTAAGATCAGGCATAAGAACATCATCAAAATTCTGGGGTTTTGTCATTCTGATGATGCCATTTTTTTGATCTATGAATTCTTACATAAAGGAAGCTTGGCTGACTTGTTATGCAGAAATGATTCTTGTTTGAATTGGAATGTGAGACTTAGAATTGCTATTGAAGTTGCTCAAGGACTTGCTTACATTCACAAGGACTACGTCCCACGTTTGCTTCATCGAAACGTCAAATCGTCGAACATTCTACTGGACGTTGACTTGATCCCGAAGCTCACGGATTTTGCTCTCGACCATATCGTTGGAGAGTCGGCGTTTCACTCAACAGTTGCTTCGGAATCCGCTCATTCTTGCTATATTGCACCAGAATGTAAATACAACAAAAAGGCAACAGAGCAAATGGATGTGTACAGCTTTGGAGTAGTGTTGCTAGAACTGGTGACTGGAAGACTAGCCGAGCGTTCGGAATCAACGGACGCTCTCGACGTGATCCAGTGGGTGAGGAGGAAGGTGAACATAGCGAATGGTGCTTCCCAAGTCCTTGACCCGAGCATCTCGGAGAATTCTCAACGAGGGTTGATGCTGGAAGCTCTAGACGTTGCCCTCCAATGCACTTCTATGATGCCTGAAAAACGACCGTCGATGCTGGAAGTCGCCAAGGCGCTTCAACTGATCGGCTCGACAACGAACCTTGATGATGCTGCTGCCTTCTCGGCTGCAGAGGATGATAGTTCGGTGTCGAGCTGA 2673 43.21 MASLLKPPLLLSLVFSFFILCSSSSEESTLLTFKASINDSTNSLSNWVSSSATHFCNWTGISCTSSSPSSLSIAAIVLQGLNLSGEISSSVCELPRLTHLNLADNRFNQPIPLHLSQCSALESLNLSNNLIWGTIPDQISLFDSLRVLDFARNHIEGKIPEGIGALKNLQTLNLRNNLISGRVPSVIFHNLTELVVLDLSENAYLMSDIPNEIGKLEKLEELWLQSSGFYGEIPYSLLGLKSLNVLDLSQNNLTGKLPEMMGSSLKNLVFFDVSENKLMGAFPNGFCSGESLVSFSVHTNFFTGNLPNSLNKCLNLERFQVQNNGFSGDFPESLWSLPKIKLIRAENNGFSGEVPEFISMATHLEQVQLDNNSFSSKIPQGLGSIRSLYRFSASLNRFHGDLPPNFCDSPLMSIINLSHNSLSGRIPEPKNCKKLVSLSLAGNSFSGEIPSSLADLPVLTYLDLSDNNLTGSIPQRLENLKFALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLQTPCSQGHPVSDMSGLNKMTCALVSIACVLGVMSLAAGFVLYYRSFKSKSRVDNWHSVYFYPLRISEHALIMGMNEKTAQGCEGAFGQVFVLSLPSRELIAVKKLVKFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLLCRNDSCLNWNVRLRIAIEVAQGLAYIHKDYVPRLLHRNVKSSNILLDVDLIPKLTDFALDHIVGESAFHSTVASESAHSCYIAPECKYNKKATEQMDVYSFGVVLLELVTGRLAERSESTDALDVIQWVRRKVNIANGASQVLDPSISENSQRGLMLEALDVALQCTSMMPEKRPSMLEVAKALQLIGSTTNLDDAAAFSAAEDDSSVSS 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1318734 1322547 - CmoCh03G000920.1 Cmo03g00092 377555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00092 890 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 874 - -
Cmo03g00092 890 SMART LRR_typ_2 94 118 IPR003591 -
Cmo03g00092 890 SMART LRR_typ_2 265 289 IPR003591 -
Cmo03g00092 890 SMART LRR_typ_2 191 216 IPR003591 -
Cmo03g00092 890 SMART LRR_typ_2 166 190 IPR003591 -
Cmo03g00092 890 SMART LRR_typ_2 240 264 IPR003591 -
Cmo03g00092 890 SMART LRR_typ_2 456 480 IPR003591 -
Cmo03g00092 890 Pfam Leucine Rich Repeat 459 480 IPR001611 GO:0005515
Cmo03g00092 890 Pfam Protein kinase domain 603 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00092 890 ProSiteProfiles Protein kinase domain profile. 595 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00092 890 PANTHER OSJNBB0022F23.6 PROTEIN 8 874 - -
Cmo03g00092 890 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Cmo03g00092 890 Gene3D Phosphorylase Kinase; domain 1 602 671 - -
Cmo03g00092 890 SUPERFAMILY Protein kinase-like (PK-like) 603 870 IPR011009 -
Cmo03g00092 890 SUPERFAMILY L domain-like 206 516 - -
Cmo03g00092 890 Gene3D Ribonuclease Inhibitor 187 263 IPR032675 -
Cmo03g00092 890 Gene3D Ribonuclease Inhibitor 23 186 IPR032675 -
Cmo03g00092 890 Gene3D Transferase(Phosphotransferase) domain 1 672 885 - -
Cmo03g00092 890 Gene3D Ribonuclease Inhibitor 264 527 IPR032675 -
Cmo03g00092 890 ProSiteProfiles Leucine-rich repeat profile. 458 481 IPR001611 GO:0005515
Cmo03g00092 890 SUPERFAMILY L domain-like 24 304 - -
Cmo03g00092 890 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00092 Cmo-Chr3:1318734 Cmo16g00796 Cmo-Chr16:4048232 5.51E-148 dispersed
Cmo03g00092 Cmo-Chr3:1318734 Cmo07g01342 Cmo-Chr7:7608369 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74159 PF00069 Pkinase 5.30E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00092 - - csv:101222175 1478.77