Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00099 ATGTCTCACCCATGTTCCAACTCATTAGCAAGTGTTCCAAAATTCATCTCCTTCCACCACCATTCCTCCCCATCACAACCATCAAATTCCTCCCCAAATATGTCTCACAATTGCTTCTCGTATCCCTACCCGAGCTCGATCCCGAGCCCGAACCCACCTCCACCGTCATCTCCGCCGCTCCGAGAGGCTCTTCCGCTACTCGGGCTAATGTCTCCTCCCGAGCAGAGACAAGAACAAGAAGAAGACGACGATGATGGAGGTAGCAAAGATGAGAACGCATCGGTGACCGTGGCGTTGCACATAGGGCTACCAAACCCTAGCCCAGCTGAAATAGCTTCCTTGATGTGTGGCTCTTCATCTGAGATTGATCAAGAACATGAGTTTGGACAGTCCACCAAAACCCTAATTAAGGGACAGTATTGGATCCCAACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGCCCTGAGTCCCTCCGGGGCACGCAGCCAACGGGCATGCTAAGGCTTCCTTGCTACTGCTGCGCCGCGGGGTGCCGCAACAACATCGACCATCCCCGGGCCAAGCCATTGAAAGACTTCAGAACTCTTCAAACACATTACAAGCGCAAGCACGGACTAAAGCCCTTCATGTGCCGAAAGTGTGGCAAAGCGTTTGCCGTGCGTGGCGACTGGCGAACGCACGAGAAGAATTGTGGTAAGCTTTGGTACTGCATTTGTGGCTCAGATTTTAAGCACAAGCGCTCGCTCAAGGACCATGTCAAGGCCTTCGGTAATGACCACGCTGCCTACGGTGGAGGCGGGATCGATGTGTTCGGAGATGAAGATGATGAGCCTGCTTCTGAAGTCGAGCAAGATAACGATGAATGA 957 51.52 MSHPCSNSLASVPKFISFHHHSSPSQPSNSSPNMSHNCFSYPYPSSIPSPNPPPPSSPPLREALPLLGLMSPPEQRQEQEEDDDDGGSKDENASVTVALHIGLPNPSPAEIASLMCGSSSEIDQEHEFGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHVKAFGNDHAAYGGGGIDVFGDEDDEPASEVEQDNDE 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1387909 1390244 - CmoCh03G000990.1 Cmo03g00099 377562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00099 318 MobiDBLite consensus disorder prediction 18 65 - -
Cmo03g00099 318 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Cmo03g00099 318 MobiDBLite consensus disorder prediction 300 318 - -
Cmo03g00099 318 Gene3D Classic Zinc Finger 154 177 - -
Cmo03g00099 318 MobiDBLite consensus disorder prediction 299 318 - -
Cmo03g00099 318 Gene3D Classic Zinc Finger 217 292 - -
Cmo03g00099 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 239 259 IPR013087 -
Cmo03g00099 318 MobiDBLite consensus disorder prediction 18 44 - -
Cmo03g00099 318 SMART c2h2final6 239 259 IPR013087 -
Cmo03g00099 318 SMART c2h2final6 155 177 IPR013087 -
Cmo03g00099 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Cmo03g00099 318 SUPERFAMILY beta-beta-alpha zinc fingers 151 177 IPR036236 -
Cmo03g00099 318 PANTHER ZINC FINGER PROTEIN WIP2 19 317 IPR043584 GO:0003700|GO:0010468
Cmo03g00099 318 MobiDBLite consensus disorder prediction 45 61 - -
Cmo03g00099 318 SUPERFAMILY beta-beta-alpha zinc fingers 224 259 IPR036236 -
Cmo03g00099 318 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 19 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00099 Cmo-Chr3:1387909 Cmo06g00072 Cmo-Chr6:444773 1.81E-134 dispersed
Cmo04g02100 Cmo-Chr4:13168839 Cmo03g00099 Cmo-Chr3:1387909 2.12E-106 transposed
Cmo03g00099 Cmo-Chr3:1387909 Cmo07g01338 Cmo-Chr7:7574902 4.27E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9359 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00099 - - bhj:120074233 529.635