Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00108 ATGGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTAGTTGATTCTCATCCTTCAGTTTCAGGGCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAGTCCTACTTGGTTCGAGTGGGAAGCTTGGAGTTTATTCAACCAATGGCGTGCAAGAACTGCTCGAGTGCCCTGTCTGCACTAATCTGATGTACCCTCCAATTTACCAGCTATGCTCGGGAGTGTTCGGAGTGCTTTCAGCGTCGAAAAAAGTTGATTTGGACTCTGTACTGTGGCGAATTCTCCATATTACTGGTTGTATTGAAGACTTAGAACATCTCATTATTCTTGAATCTTTACGTCATGGAGGTTGCCCGAATGGCCACACGTTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTGCTGCCCGACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCCTGCAGATACCAGAATTTGGGTTGCCAAGATATTTTTCCTTACTACAGTAAGCTTAAGCATGAGCAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCGGAGTGTTCGGTCACGGGTGACATCCCGTCTCTTGTTGCACATCTCAAAGATGATCACAAGGTTGACATGCACGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCGCACGAAGTTGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGACAGTTCTGCTTGCATTTCGAGGCGTTCCAGCTAGGAACAGCGCCTGTTTACATGGCGTTCTTACGATTCATGGGCGAAGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAGGTGGGTCACAACGGGCGTAAACTGATATGGCAAGGAATTCCGAGAGGCATCCGTGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCGGGAGGAGAAAGACAAGAGCTGAAGCTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA 1071 46.22 MAMAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKVLLGSSGKLGVYSTNGVQELLECPVCTNLMYPPIYQLCSGVFGVLSASKKVDLDSVLWRILHITGCIEDLEHLIILESLRHGGCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFLRFMGEDNEAKKFSYSLEVGHNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1529840 1531544 + CmoCh03G001080.1 Cmo03g00108 377571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00108 356 ProSiteProfiles Zinc finger SIAH-type profile. 161 221 IPR013010 GO:0008270
Cmo03g00108 356 MobiDBLite consensus disorder prediction 23 37 - -
Cmo03g00108 356 SUPERFAMILY TRAF domain-like 161 353 - -
Cmo03g00108 356 Pfam Seven in absentia protein family 150 349 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo03g00108 356 MobiDBLite consensus disorder prediction 1 37 - -
Cmo03g00108 356 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 3 80 - -
Cmo03g00108 356 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 121 356 - -
Cmo03g00108 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 215 IPR013083 -
Cmo03g00108 356 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 216 349 IPR008974 GO:0005515
Cmo03g00108 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 3 80 - -
Cmo03g00108 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT1-RELATED 121 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00108 Cmo-Chr3:1529840 Cmo04g01413 Cmo-Chr4:7192349 9.59E-158 dispersed
Cmo03g00108 Cmo-Chr3:1529840 Cmo07g01333 Cmo-Chr7:7517223 2.59E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00108 K04506 - cpap:110811721 558.14