Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00109 ATGGAAGAAGACGACCCCAGTAAGGTTCTTGATCTCATCAAGGATCTTGTTCTTCGTCTTCTTTCCCACAATCCCACCTCCAATTCCAGCCCTACCTCTTCCGATTTCCAAAAGTCCCTTCGCTATGCGATTCGCATTCTTACTAGTCGAATGACTCCCTCCATTGCTCCTGATGCTGCCGCCATTGCTGAGTCCATCAAGCGTCGGCTCGCCACTGAGGGTAAGTCTTCTCAGGCACTCACTTTTGCTGATCTTTACACTAAATTTGCGTCTAAAACTGGCCCTGGGAGTGTGAATAATAAGTGGGCTGTGCTTTATTTGCTCAAAATTGTGGCGGAGGATCGGAAATGTAGACAGACCCAGTTTGAATCTTCAGTGCTTTTGCCTAATTTAGTGGCGAGTGATCCTGTGTTGGGAAAGAAATCTAGTGGGGCGGAGAAGGAGTGGCAGAAGGGGGTTTTGCTGGTTGCGAAAGACCCTGAGAATCTTCGCGATGTTGCTTTTAAGGAGTTTGCTAATTTGTTAAAGGAGGAAAATGAAGTGTCTGAAGAGGTTTTGGTGAGGGATGTGTTGTATGCTTGTCAAGGAATTGATGGAAAGTATGTGAAATTTGACAACAATGCTGATGGGTATGTTTTATCCAATATCGTTAAGGCTCCCAGGGCAACGAGGACAATGGTTCGCAAGCTCTGTGAAATTGGGTGGCTGTTTAGGAAGGTTAAAGGTTATATCTCAGAGAATATGGAACGTTTTCCAGCCGAAGATGTTGGAACTGTTGGACATGCTTTTTGTGCTGCATTACAGGATGAGCTTTCAGAATACTATAAACTGTTGGCAGTTGTCGAAGCTCAGTCGATGAATCCGATACCTTTGGTTTCGGAGGCAGCAAGTTCAGGAAACTATCTGTCTCTAAGGAGATTGGCAGTCTGGTTCGCAGAGCCAATGGTGAAAATGAGGTTGATGGCTGTATTGGTGGACAAGTGTCGGGTCCTGAAGGGTGGGGCAATGGCTGGGGCCATTCATTTACATGCTCAGCATGGTGACCCCTTGGTGCTCGAATTCATGAGGCGTTTGTTGCGGCGTGTATGCTCTCCACTTTTTGAGATGGTAAGGAGCTGGGTATTAGAAGGGGAGCTGGAAGACATTTTTTCTGAGTTTTTTGTTGTTGGTCAACAAGTGAAAGCTGAATCTCTCTGGAGGGAAGGTTATAGGCTTCATTCTGGCATGCTTCCATCGTTTATTTCGCAGTCTCTAGCCCAACGTATTTTGAGGACTGGGAAATCGATTAATTTCCTTCGTGTTTGTTGTGAGGACATGGGATGGGCTGATGCTGCAACAGAAGCAGCAGTAGCGGCTGGGACTACAACCAAAAGGGGAAGTCTTGGATATGGTGAAACCGACGCCCTTGAATCTTTGGTTGATGGAGCAGCAAAAAGAATAGACAAACACTTGTTGGATGTAATGCACAAGCGGTATAAGTTCAAAGACCACTGTCTAGCAATCAAGCGCTATTTACTATTAGGACAAGGAGATTTTGTTCAATATTTGATGGATATTGTTGGACCTGAGCTTTCTGAACCTGCTAATTCTATTAGCTTGTTTAAGTTATCTGGTCTCCTCGAAACTGCAATTCGCTCCTCTAATGCTCAGTATGACGATCCCGACATCTTGGATAGATTAAAGGTTAAGATGATGCCTCATGGAACTGGAGATAGGGGTTGGGATGTATTCTCTTTGGAATATGAGGCAAGAGTCCCACTAGATACTGTATTTACAGAGTCCGTCATGTCGAAGTATTTAAGGATCTTTAATTTCCTTTGGAAGCTTAGACGTGTTGAGCATGCACTTATAGGTACTTGGAAGACGATGAAACCAAACTGCATCACGTCCTGTTCATTGACTAAGCTGCACCATGGGGTTAAGCTGCAATTACTCTCAACATTGAGGCGATGCCAGGTCCTTTGGGTTGAGATGAATCATTTTGTCTCAAACTTGCAATACTACATAATGTTCGAAGTCTTGGAGGTATCGTGGTCGGATTTTTCAAACGAAATGGAAGCGGCAATGGATTTGGATGATTTACTTGCGGCTCATGAAAAGTATCTTCATTCAATATTTGAGAAATCTCTTCTTGGAGAACAATCTCAGCCACTTTGCAAGTCACTTTTTGTTTTGTTTGATCTAATATTGCGATTTCGAAGTAATGCGGACAGGTTGTACGAGGGAATACATGAATTACAATGCAGAACAATAGAATCATCTTTACCCTCCAGAGGCAAGAGTACAAATATCCGTTCGACAGAAAAATCTTTAGAAACAGCATCATGGTTAGCTGATGGCAAGAAGGCTCTAACGCAACGTGCTCGTGAATTTCTTCGGAATGTTGAACAAGATCTAGCTGCATTAGCTAAAGAGTATTCTTCATTACTTGAGGGATTCATTTCTCAGCTGCCTTTGCAACAGCATGTTGATTTGAAGTTTCTCCTATTCCGCCTTGACTTCACTGAATTTTACAGCCAGTTACAGCCTCGTGTGTAG 2538 43.66 MEEDDPSKVLDLIKDLVLRLLSHNPTSNSSPTSSDFQKSLRYAIRILTSRMTPSIAPDAAAIAESIKRRLATEGKSSQALTFADLYTKFASKTGPGSVNNKWAVLYLLKIVAEDRKCRQTQFESSVLLPNLVASDPVLGKKSSGAEKEWQKGVLLVAKDPENLRDVAFKEFANLLKEENEVSEEVLVRDVLYACQGIDGKYVKFDNNADGYVLSNIVKAPRATRTMVRKLCEIGWLFRKVKGYISENMERFPAEDVGTVGHAFCAALQDELSEYYKLLAVVEAQSMNPIPLVSEAASSGNYLSLRRLAVWFAEPMVKMRLMAVLVDKCRVLKGGAMAGAIHLHAQHGDPLVLEFMRRLLRRVCSPLFEMVRSWVLEGELEDIFSEFFVVGQQVKAESLWREGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCEDMGWADAATEAAVAAGTTTKRGSLGYGETDALESLVDGAAKRIDKHLLDVMHKRYKFKDHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANSISLFKLSGLLETAIRSSNAQYDDPDILDRLKVKMMPHGTGDRGWDVFSLEYEARVPLDTVFTESVMSKYLRIFNFLWKLRRVEHALIGTWKTMKPNCITSCSLTKLHHGVKLQLLSTLRRCQVLWVEMNHFVSNLQYYIMFEVLEVSWSDFSNEMEAAMDLDDLLAAHEKYLHSIFEKSLLGEQSQPLCKSLFVLFDLILRFRSNADRLYEGIHELQCRTIESSLPSRGKSTNIRSTEKSLETASWLADGKKALTQRAREFLRNVEQDLAALAKEYSSLLEGFISQLPLQQHVDLKFLLFRLDFTEFYSQLQPRV 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1532343 1535358 + CmoCh03G001090.1 Cmo03g00109 377572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00109 845 Coils Coil 264 284 - -
Cmo03g00109 845 PANTHER GAMMA-TUBULIN COMPLEX COMPONENT 28 833 - -
Cmo03g00109 845 Coils Coil 792 812 - -
Cmo03g00109 845 Pfam Gamma tubulin complex component N-terminal 187 490 IPR041470 -
Cmo03g00109 845 Gene3D - 495 837 IPR042241 -
Cmo03g00109 845 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 28 833 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Cmo03g00109 845 Pfam Gamma tubulin complex component C-terminal 496 838 IPR040457 GO:0043015
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00109 Cmo07g01333 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01212 Cmo-Chr2:7288344 Cmo03g00109 Cmo-Chr3:1532343 5.00E-10 dispersed
Cmo03g00109 Cmo-Chr3:1532343 Cmo06g00708 Cmo-Chr6:3593397 3.93E-27 dispersed
Cmo03g00109 Cmo-Chr3:1532343 Cmo07g01333 Cmo-Chr7:7517223 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00109 K16570 - csv:101210691 1557.35