Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00110 ATGAACGTAAACGCATCAAATTTCGTAAAACACCCACCGGATTACCTGAGAAGAATCGATCAAATAGCAAAAACCGCCGCGAATTCCGGCAATCAGACGGCGACAGCAAACTCCGAGGGTTATTCAAAAACTCACTTCCGGTGCGACAGTTTGGAGGCGCCGGGAATGGTGATTAAGCCGCACACCGGCGGCGATGTGCGGTGGGACGCCATTAATATGGTGTCGAAAGGGACGGCGTTGAATTTGAGCCATTTTCAGCTGTTGAAGAGGCTTGGTTATGGGGATATTGGGAGTGTTTATTTGGTGGAATTGAGAGGGACTGATACGTACTTTGCTATGAAAGTGATGGATAAGGTGTCTTTGGCTAGCCGGAATAAGGTGTTGAGGGCGCAAACGGAGAGGGAGATTTTGGGGCTTTTGGATCATCCATTTTTGCCCACACTTTATTCTTATTTTGAAACTGATAAGTTTTATTGTTTGGTTATGGAGTTTTGTAGCGGTGGGAATCTTCATTCTCTTCGCCAAAAGCAACCTTACAAGTATTTTACTGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTCCTATTAGCATTGGAATACCTTCACATGTTAGGCATAGTCTACAGAGATTTGAAACCTGAAAACCTCTTAATCCGAGACGAAGGCCACATCATGCTCTCCGATTTCGACCTCTCCCTCCGCTGCTCCGTCAGCCCGACCCTCGTCAAATCCTCCTCCGTCAACGTCAATGGCAGCTCCAACTCTGGCAGCAACGGCAGCAATGGCGGAGGCAGCGGTGGCATTCTCGACGACGAATCCGCTGTCCATGGCTGCATGCAACCTTCCAATTTCCTCCCTCGCATTCTCCCTTCCAAGAAGAATCGCAAGTCGAAATCCGACTTCGGCCTCTTCGTCGGTGGCTCCCTCCCCGAACTCATGGCCGAACCAACCAACGTTCGGTCCATGTCCTTTGTCGGTACACACGAGTATCTCGCACCGGAGATCATACAAGGGGAAGGTCACGGCAGCGCGGTCGACTGGTGGACATTTGGGATCTTCCTCTACGAGCTTCTTCATGGGACCACACCCTTCAAAGGGTCTGGAAATAGGGCCACACTTTTCAACGTGGTGGAGCAGCCGCTTAGGTTCCCGGAGGCGCCGCAGGCCAGCCTAGCCGCTAGAGATCTCATCAGAGGGCTTCTGGTCAAGGAGCCGCAAAAGAGGATCGCTTATAGAAGAGGCGCCACTGAGATCAAGCAGCATCCCTTCTTTGATGGAGTGAATTGGGCGTTGGTGAGAAGCGCAATGCCGCCGCACGTGCCGGAGCCGGTGGATTTCAGCCAGTTTGCCAGAAAGAAGGGCGGCGGCGGAGTGCAGGAAGAGAAGAAGCCGGTGGCTGCTGGGAATTCTTCGCCGTCTACTGGTGGCGATCCCAATTATGTGGATTTTGAGTACTTCTAA 1461 51.68 MNVNASNFVKHPPDYLRRIDQIAKTAANSGNQTATANSEGYSKTHFRCDSLEAPGMVIKPHTGGDVRWDAINMVSKGTALNLSHFQLLKRLGYGDIGSVYLVELRGTDTYFAMKVMDKVSLASRNKVLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPYKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGSSNSGSNGSNGGGSGGILDDESAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVEQPLRFPEAPQASLAARDLIRGLLVKEPQKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFARKKGGGGVQEEKKPVAAGNSSPSTGGDPNYVDFEYF 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1547262 1550429 - CmoCh03G001100.1 Cmo03g00110 377573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00110 486 ProSiteProfiles Protein kinase domain profile. 85 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00110 486 MobiDBLite consensus disorder prediction 247 266 - -
Cmo03g00110 486 SUPERFAMILY Protein kinase-like (PK-like) 82 448 IPR011009 -
Cmo03g00110 486 MobiDBLite consensus disorder prediction 450 481 - -
Cmo03g00110 486 MobiDBLite consensus disorder prediction 247 264 - -
Cmo03g00110 486 Gene3D Phosphorylase Kinase; domain 1 83 168 - -
Cmo03g00110 486 PANTHER FLIPPASE KINASE 1-RELATED 26 486 - -
Cmo03g00110 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Cmo03g00110 486 Pfam Protein kinase domain 86 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00110 486 Pfam Protein kinase domain 312 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00110 486 CDD STKc_phototropin_like 83 445 - -
Cmo03g00110 486 Gene3D Transferase(Phosphotransferase) domain 1 169 238 - -
Cmo03g00110 486 SMART serkin_6 85 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g00110 486 Gene3D Transferase(Phosphotransferase) domain 1 299 442 - -
Cmo03g00110 486 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 26 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00110 Cmo-Chr3:1547262 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo03g00110 Cmo-Chr3:1547262 Cmo07g01328 Cmo-Chr7:7501805 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74161 PF00069 Pkinase 3.30E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00110 - - cmos:111435499 943.34