Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00167 ATGTGGATTTTGGTGGGTCTTTGTTTTCAGTACAAAGCTATCATCTCTTCTCATCTTCACCTCCTTCTCCTTCTTCATCCACCATTCTTCATTTCTCTCCGCCCTCTCTCTGAAAAATCCCCTTCTTCTTCACCTTCCCTGTGTATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGACTCCAAATTCCATGTTCTTGCCGTCGATGATAGCGTCATCGACCGGAAATTGATTGAAAGGCTCCTCAAAACCTCCTCTTATCAAGTTACTACGGTTGATTCTGGGAGTAAAGCTCTGGAGTTCTTAGGATATGACTCCGGAAATAACTCGATTCCTTCTCTTGCATCTAACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGAGATGACTGGCTATGATTTATTGAAGAAGATCAAGGTATTTTGCTTCATCTTCTGCCTTTTGATACCTTTATGTTCTGTACTGCACACCAAATTTTTACTATCTGGGTCCTTGTTGTATCTAGAGATTTTGAGATTTCGTTTCATTTTTGGTAACATTATCCAAGAAATTCTGACAAATTATATTTTCCATTCAAACAAACTGAACCTGGGAAGTGTTTCTGAAGGAGTTTCTCTGGTTTTGCAGGGGTCTAAAGCTCTGAGAAACATTCCCGTTGTGATTATGTCATCTGAGAATGTTCCTGCAAGAATCAATAGATGCTTAGAAGAAGGAGCAGAGGAATTCTTCTTGAAACCTGTCCGACTTTCAGATGTCAACCGGCTTAGACCCCACATGTTGAAAACCAAACTCAAAACATCAGAAGAACAGCCTGATTCAGCAAGCCAACCCCAAGCACCAGAGCAGCAACAACATGAACAGCATGAACAACATGAACAACATGAACAAGAACGATTACGATCGATACCGTTGCAGGTAGTCCCGACATCGCTGCAAGATCAAGATCGATTGCTATCCGTTCCACTGCTGCCGACGCTGCCACAAGAGCAAGAACAGTTGCAAATACTCCCACCAACGCCGCCGCAACAATCGAACAACAACAAGAGGAAGGCCATGGAAGATGGACTTTCACCAGATAGAACAAGGCCAAGATACAATGGTATTACCACCATGGTGTAG 1152 42.71 MWILVGLCFQYKAIISSHLHLLLLLHPPFFISLRPLSEKSPSSSPSLCMGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSYQVTTVDSGSKALEFLGYDSGNNSIPSLASNHHHHHQEVDVNLVITDYCMPEMTGYDLLKKIKVFCFIFCLLIPLCSVLHTKFLLSGSLLYLEILRFRFIFGNIIQEILTNYIFHSNKLNLGSVSEGVSLVLQGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLRPHMLKTKLKTSEEQPDSASQPQAPEQQQHEQHEQHEQHEQERLRSIPLQVVPTSLQDQDRLLSVPLLPTLPQEQEQLQILPPTPPQQSNNNKRKAMEDGLSPDRTRPRYNGITTMV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2501963 2504156 + CmoCh03G001670.1 Cmo03g00167 377630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00167 383 Gene3D - 65 369 - -
Cmo03g00167 383 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 59 152 - -
Cmo03g00167 383 SUPERFAMILY CheY-like 63 151 IPR011006 -
Cmo03g00167 383 PANTHER TWO-COMPONENT RESPONSE REGULATOR 221 381 IPR045279 GO:0009736
Cmo03g00167 383 MobiDBLite consensus disorder prediction 274 308 - -
Cmo03g00167 383 Pfam Response regulator receiver domain 66 150 IPR001789 GO:0000160
Cmo03g00167 383 MobiDBLite consensus disorder prediction 343 362 - -
Cmo03g00167 383 PANTHER TWO-COMPONENT RESPONSE REGULATOR 59 152 IPR045279 GO:0009736
Cmo03g00167 383 ProSiteProfiles Response regulatory domain profile. 65 271 IPR001789 GO:0000160
Cmo03g00167 383 MobiDBLite consensus disorder prediction 280 294 - -
Cmo03g00167 383 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 221 381 - -
Cmo03g00167 383 CDD REC_typeA_ARR 66 266 - -
Cmo03g00167 383 MobiDBLite consensus disorder prediction 343 383 - -
Cmo03g00167 383 SUPERFAMILY CheY-like 221 279 IPR011006 -
Cmo03g00167 383 SMART REC_2 64 267 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00167 Cmo07g01403 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00167 Cmo-Chr3:2501963 Cmo04g01404 Cmo-Chr4:7166482 3.32E-23 dispersed
Cmo03g00167 Cmo-Chr3:2501963 Cmo07g01403 Cmo-Chr7:8052325 1.06E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9361 PF00072 Response_reg 5.70E-09 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00167 K14492 - csv:101220999 202.216