Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00225 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATCAAGATGTAGCACAGAATCTTAAGAAACTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACCTGGAAAGTTGATGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAGGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGGGGACATAAAGTTTTGGTTCTAAATGACGTTGACAAACTATCCAGAGAAGCACAGCACTCTCTTAGGAGAACGATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGATGATCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATACCACCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTACCAGGTTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCACTGGGCTGCATATTATGAACACAGGATGCGACTTGGCCAGAAATCCATCTTCCATATTGAAGCTTTTGTGGCAAAGTTCATGAGCATATACAAGAGTTTCCTCATTTCAACGTTCGGCTGA 1065 43.38 MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3512963 3519248 + CmoCh03G002250.1 Cmo03g00225 377688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00225 354 Pfam DNA polymerase III, delta subunit 18 187 - -
Cmo03g00225 354 Gene3D - 1 189 IPR027417 -
Cmo03g00225 354 CDD AAA 19 181 - -
Cmo03g00225 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Cmo03g00225 354 SMART AAA_5 33 192 IPR003593 -
Cmo03g00225 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Cmo03g00225 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Cmo03g00225 354 Gene3D - 190 248 - -
Cmo03g00225 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Cmo03g00225 354 Gene3D - 252 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00225 K10756 RFC3_5; replication factor C subunit 3/5 - csv:101221072 657.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00225 Cmo-Chr3:3512963 Cmo07g00479 Cmo-Chr7:2183312 8.43E-74 dispersed
Cmo03g00225 Cmo-Chr3:3512963 Cmo15g00675 Cmo-Chr15:3298109 5.01E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo09g01339 . 106 797 Core DNA Replication Machinery Family AT4G14700 66.9 2.2e-270 929.1
Cmo09g01339 . 73 797 Core DNA Replication Machinery Family AT4G12620 67.4 2.5e-282 968.8
Cmo12g00468 . 2 361 Core DNA Replication Machinery Family AT2G37560 67.5 7.5e-143 504.2
Cmo02g01001 . 21 361 Core DNA Replication Machinery Family AT5G16690 54.4 1.5e-100 364.8
Cmo04g01157 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.5 1.9e-156 549.7
Cmo17g00416 . 3 520 Core DNA Replication Machinery Family AT4G29910 57.2 1.6e-166 583.6
Cmo05g00872 . 1 183 Core DNA Replication Machinery Family AT1G26840 70.5 3.6e-66 249.2
Cmo06g01695 . 894 1566 Core DNA Replication Machinery Family AT1G79150 50.9 9.1e-195 677.9
Cmo14g01078 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.3 0.0e+00 1339.3
Cmo06g01740 . 1 950 Core DNA Replication Machinery Family AT1G44900 74.2 0.0e+00 1328.2
Cmo07g00117 CST 1 579 Core DNA Replication Machinery Family AT5G46280 80.5 3.0e-266 914.8
Cmo03g01381 CST 1 196 Core DNA Replication Machinery Family AT5G46280 50.6 2.8e-62 237.3
Cmo19g00696 . 1 814 Core DNA Replication Machinery Family AT2G16440 73.5 0.0e+00 1090.1
Cmo11g01110 . 200 882 Core DNA Replication Machinery Family AT2G16440 60.2 2.3e-246 849.4
Cmo12g01194 . 951 1685 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.5
Cmo07g00005 . 528 1322 Core DNA Replication Machinery Family AT5G44635 70.1 0.0e+00 1120.1
Cmo17g01008 . 8 719 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1220.7
Cmo08g00461 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.5 0.0e+00 1216.4
Cmo20g00379 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.8 6.6e-164 574.7
Cmo20g00379 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.7 7.1e-144 508.1
Cmo08g00224 . 222 814 Core DNA Replication Machinery Family AT3G25100 76.9 8.1e-262 900.2
Cmo17g01242 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.5 2.7e-257 885.2
Cmo06g00348 . 39 872 Core DNA Replication Machinery Family AT3G09660 67.5 3.2e-306 1048.1
Cmo19g00482 . 16 686 Core DNA Replication Machinery Family AT2G14050 64.6 4.4e-245 844.7
Cmo20g00749 . 1 438 Core DNA Replication Machinery Family AT2G20980 50.9 1.9e-110 396.7
Cmo09g00762 . 7 968 Core DNA Replication Machinery Family AT1G77320 50.4 1.3e-259 893.6
Cmo08g00638 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 2.3e-75 279.3
Cmo07g01233 . 1 179 Core DNA Replication Machinery Family AT3G12530 58.7 6.7e-56 214.2
Cmo04g03028 . 1 184 Core DNA Replication Machinery Family AT1G19080 64.7 1.1e-63 240.4
Cmo04g03028 . 1 184 Core DNA Replication Machinery Family AT3G55490 64.7 1.1e-63 240.4
Cmo14g02113 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.8e-52 201.4
Cmo02g00525 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1768.4
Cmo18g00706 . 2 610 Core DNA Replication Machinery Family AT1G67630 63.9 1.6e-220 763.1
Cmo08g00172 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.3e-185 646.0
Cmo09g01248 . 1 450 Core DNA Replication Machinery Family AT5G41880 64.6 2.1e-177 619.4
Cmo07g00846 . 1 1086 Core DNA Replication Machinery Family AT5G63960 81.1 0.0e+00 1808.1
Cmo14g00422 . 1 438 Core DNA Replication Machinery Family AT2G42120 76.5 4.2e-207 718.0
Cmo08g00172 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.7 2.3e-185 646.0
Cmo02g01374 . 1 2094 Core DNA Replication Machinery Family AT1G08260 70.5 0.0e+00 2952.9
Cmo02g01374 . 9 2200 Core DNA Replication Machinery Family AT2G27120 67.4 0.0e+00 2919.8
Cmo01g00788 . 510 1031 Core DNA Replication Machinery Family AT5G22110 65.4 8.1e-191 664.1
Cmo02g01336 . 1 928 Core DNA Replication Machinery Family AT5G22010 62.5 2.2e-303 1038.9
Cmo16g01059 . 3 332 Core DNA Replication Machinery Family AT1G63160 89.7 1.4e-170 596.3
Cmo03g00225 . 1 354 Core DNA Replication Machinery Family AT5G27740 83.3 2.4e-176 615.5
Cmo01g01421 . 1 336 Core DNA Replication Machinery Family AT1G21690 80.1 1.6e-150 529.6
Cmo15g00675 CST 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 7.0e-155 544.3
Cmo04g02487 CST 1 382 Core DNA Replication Machinery Family AT1G77470 70.5 9.2e-147 517.3
Cmo05g01408 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 1.2e-252 869.8
Cmo06g00609 CST 34 701 Core DNA Replication Machinery Family AT2G06510 52.1 1.3e-201 700.3
Cmo16g01260 CST 34 686 Core DNA Replication Machinery Family AT2G06510 52.2 5.4e-200 694.9
Cmo11g00212 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.1 1.5e-242 836.3
Cmo06g00609 CST 10 808 Core DNA Replication Machinery Family AT5G45400 51.6 2.4e-230 796.2
Cmo16g01260 CST 10 785 Core DNA Replication Machinery Family AT5G45400 51.4 3.3e-224 775.8
Cmo11g00212 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.0 2.3e-235 812.4
Cmo06g00609 CST 5 822 Core DNA Replication Machinery Family AT4G19130 53.3 7.5e-231 797.7
Cmo16g01260 CST 5 772 Core DNA Replication Machinery Family AT4G19130 54.8 1.3e-227 786.9
Cmo09g00511 CST 1 268 Core DNA Replication Machinery Family AT2G24490 50.2 1.2e-69 260.8
Cmo01g01597 CST 1 167 Core DNA Replication Machinery Family AT2G24490 52.2 3.4e-45 179.5
Cmo11g01256 . 1 172 Core DNA Replication Machinery Family AT5G26680 91.9 4.6e-86 315.8
Cmo11g01257 . 18 183 Core DNA Replication Machinery Family AT5G26680 59.5 5.3e-58 222.6
Cmo14g01511 CST 1 262 Core DNA Replication Machinery Family AT2G25100 66.0 7.0e-99 357.8
Cmo20g00553 . 44 804 Core DNA Replication Machinery Family AT1G08130 68.0 2.9e-291 998.4
Cmo20g00553 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.6 9.6e-240 827.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008861 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g00225 Cmo_Chr03 FPKM 20.664452 17.699469 21.773642 18.672993 14.166247 13.052314 13.753065 46.37516 53.079132 45.985462