Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00225 ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGATCAGATCACAGTTCATCAAGATGTAGCACAGAATCTTAAGAAACTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTTTGGCCCCTCCGGTTCCGGAAAGAAAACCCTAGTCATGGCGCTTATCCGGCAGATGTTTGGAGCAAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACCTGGAAAGTTGATGCTGGAACTAGAAATGTTGAAATAGAGTTAACCACCATATCAAGTACAAACCACGTCGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAGGATATGGCGAAAAACAGACCCATTGACTCCAAAGGGAAAAGGGGACATAAAGTTTTGGTTCTAAATGACGTTGACAAACTATCCAGAGAAGCACAGCACTCTCTTAGGAGAACGATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGCTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCAACAGATGATCAGATTGTCAAGGTACTAGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGCATTGCAGAAAAATCAAACCGGAGTTTGAGGAGAGCTATACTATCATTCGAGACTTGTCGTGTTCAACAGTATCCTTTTGTTAGTAACCAGGCAATACCACCGATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGCCCCAAGAGACTGTACCAGGTTCGTGGGAAGTTATATGAACTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTCAAGAAATTGGATGCTGAATTAAAGCATGAGGTCTGTCACTGGGCTGCATATTATGAACACAGGATGCGACTTGGCCAGAAATCCATCTTCCATATTGAAGCTTTTGTGGCAAAGTTCATGAGCATATACAAGAGTTTCCTCATTTCAACGTTCGGCTGA 1065 43.38 MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3512963 3519248 + CmoCh03G002250.1 Cmo03g00225 377688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00225 354 Pfam DNA polymerase III, delta subunit 18 187 - -
Cmo03g00225 354 Gene3D - 1 189 IPR027417 -
Cmo03g00225 354 CDD AAA 19 181 - -
Cmo03g00225 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 239 IPR027417 -
Cmo03g00225 354 SMART AAA_5 33 192 IPR003593 -
Cmo03g00225 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Cmo03g00225 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Cmo03g00225 354 Gene3D - 190 248 - -
Cmo03g00225 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Cmo03g00225 354 Gene3D - 252 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00225 Cmo-Chr3:3512963 Cmo07g00479 Cmo-Chr7:2183312 8.43E-74 dispersed
Cmo03g00225 Cmo-Chr3:3512963 Cmo15g00675 Cmo-Chr15:3298109 5.01E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00225 K10756 - csv:101221072 657.521