Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00262 ATGAATGACTTGATGACCAAATCGTTCACGAGCTATGTCGATCTGAAGAAGGCCGCCATGAAAGATATCGACCTCGAAGCCGGTTTAGAAATGGCATCGTCCGCTCCTGGCGACAATGGCGACATGGGTCTCTTTCTCGAAGAGGCCGAGAAGGTGAAAACCGAGATGGGTTCGATTAGAGAGATTTTAGTGAAGCTCCAACAAGCCAATGAAGAGACAAAGTCGGCTCATAAACCCGAAACCCTCAAATTGCTTCGGAATACGATCAATGTCGATATTGTAACAGTTCTGAAAAAAGCTCGATCCATCCGATCCCACCTCGAGGAAATGGACCGTGCCAATGCTGCCAAGAAACGTCTCTCGGGTAGTAAAGAGGGCACTGCCATTTACAGAACACGAATTGCGGTGACGAACGGGTTACGAAAGAAGTTAAAGGAGCTGATGATGGAGTTTCAGAGCTTGAGGCAGAGGATGATGACGGAGTATAAGGAGACGGTAGGACGGCGATACTTTACAGTGACGGGGGAGAAGGCGAATGAGGAGGTGATAGAGAGGATAATATCAGATGGCGGGGAGGAGTTTTTGGGGAGGGCGATAAAGGAGCACGGGGAAGGTGGGAAGGTGGCGGTGGCGGAGACGGTGGAGGAGATACAGGACCGACACGGGGCGGCGAAGGAAATAGAGAAGAGCTTGTTGGAGCTGCACCAAGTGTTCTTGGACATGGCGGTGATGGTGGAGGCACAAGGGGAGAAGATGGATAACATAGAACATCATGTGATGAATGCTTCGCAGTATGTTAGGGATGGGACAAAGGAATTGAAGAGTGCTAAGGAATTGCAAAGGAGTAGTAGAAAATGTATGTGTTTGGGGATTTTGCTATTGCTTTTGATTATTTTGGTTGTTGTTGTTCCTATTAGTGTTAGTTTTGGAAGTTCTTGA 939 48.03 MNDLMTKSFTSYVDLKKAAMKDIDLEAGLEMASSAPGDNGDMGLFLEEAEKVKTEMGSIREILVKLQQANEETKSAHKPETLKLLRNTINVDIVTVLKKARSIRSHLEEMDRANAAKKRLSGSKEGTAIYRTRIAVTNGLRKKLKELMMEFQSLRQRMMTEYKETVGRRYFTVTGEKANEEVIERIISDGGEEFLGRAIKEHGEGGKVAVAETVEEIQDRHGAAKEIEKSLLELHQVFLDMAVMVEAQGEKMDNIEHHVMNASQYVRDGTKELKSAKELQRSSRKCMCLGILLLLLIILVVVVPISVSFGSS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3914507 3915775 - CmoCh03G002620.1 Cmo03g00262 377725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00262 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Cmo03g00262 312 SUPERFAMILY t-snare proteins 41 269 IPR010989 GO:0016020|GO:0016192
Cmo03g00262 312 PANTHER SYNTAXIN 4 305 IPR045242 -
Cmo03g00262 312 SMART tSNARE_6 209 276 IPR000727 -
Cmo03g00262 312 CDD SNARE_syntaxin1-like 213 274 - -
Cmo03g00262 312 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 305 - -
Cmo03g00262 312 Pfam SNARE domain 251 302 IPR000727 -
Cmo03g00262 312 ProSitePatterns Syntaxin / epimorphin family signature. 220 260 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cmo03g00262 312 CDD SynN 42 198 IPR006011 GO:0016020
Cmo03g00262 312 Gene3D - 209 310 - -
Cmo03g00262 312 Pfam Syntaxin 45 249 IPR006011 GO:0016020
Cmo03g00262 312 SMART SynN_4 37 163 IPR006011 GO:0016020
Cmo03g00262 312 Coils Coil 137 157 - -
Cmo03g00262 312 Gene3D - 42 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00262 Cmo07g01220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00262 Cmo-Chr3:3914507 Cmo13g00695 Cmo-Chr13:7115501 2.80E-96 dispersed
Cmo03g00262 Cmo-Chr3:3914507 Cmo07g01220 Cmo-Chr7:6644227 1.47E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00262 K08486 - csv:101220775 505.753