Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g00263 ATGTTGACCCAATTCCGATTTCCGTTCAATTATTTTACGGCTGTAATCATGATCGATGCTATTAAGGGTGCGATCGGCGATGCCGTTCTCACTTCCATGTGGATTTTCTGCGCTTCGTCTCTTGGAGTTCTTACCTCTGTCCTGTACTCGGTTGCTGGTGTTTATGGCATTCCGCTTCACCCGCTTTTTATCACTACTGCTCTCGTCTTCGTTCTTGTTTTCGTTTTTAATATAATTGGCGCTGCTTTGGGTGGGGCTAGCTTTAATCCCACTGCTACTGCCGCTTTCTATGCTGCTGGCGTTGGTCCGACCTCTCTCCTCTCCATGGCTCTCCGTTTCCCTGCTCAGGCAGCTGGTGCGGTTGCTGGTGCTGTGGCGATCAAGGAGGTGATGCCAATACAATACAAGCACATGCTTGGTGGACCTACTCTAAAAGTTGACATTCATTCTGGAGCCACAGCTGAAGGAGTTTTGACATTTCTAATCAGTTTTGCTGTTCTTCTAATTGTACTCAGAGGCCCCTCCAGTCCAGTTATTCAAACATGGTTGATGGCAGTGGCTACCGTAGCGTTAATCGTTGCTGGTTCCGATTACACAGGACCTTCCATGAATCCTGCAAATGCGTTTGGATGGGCATATCTAAACAACACGCACGATACATGGGAGCAGTTGTACGTGTACTGGATCGCCCCGTTCATAGGAGCCATTTTGGCTGCTTGGCTTTTCAGAATCATCTTCCCACCACCAGCCCCAGCCCCAGCCAAGCAGAAGAAAGCTTGA 780 48.72 MLTQFRFPFNYFTAVIMIDAIKGAIGDAVLTSMWIFCASSLGVLTSVLYSVAGVYGIPLHPLFITTALVFVLVFVFNIIGAALGGASFNPTATAAFYAAGVGPTSLLSMALRFPAQAAGAVAGAVAIKEVMPIQYKHMLGGPTLKVDIHSGATAEGVLTFLISFAVLLIVLRGPSSPVIQTWLMAVATVALIVAGSDYTGPSMNPANAFGWAYLNNTHDTWEQLYVYWIAPFIGAILAAWLFRIIFPPPAPAPAKQKKA 259
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 3918355 3922097 + CmoCh03G002630.1 Cmo03g00263 377726
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g00263 259 Pfam Major intrinsic protein 20 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g00263 259 Gene3D Glycerol uptake facilitator protein. 15 254 IPR023271 -
Cmo03g00263 259 PANTHER AQUAPORIN SIP1-1 19 258 IPR044222 GO:0015250
Cmo03g00263 259 PANTHER AQUAPORIN SIP1-1 19 258 - -
Cmo03g00263 259 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g00263 259 PRINTS Major intrinsic protein family signature 69 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g00263 259 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g00263 259 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g00263 259 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g00263 259 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g00263 259 SUPERFAMILY Aquaporin-like 16 255 IPR023271 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo03g00263 Cmo06g00036 CCT
Cmo03g00263 Cmo07g01221 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00263 Cmo-Chr3:3918355 Cmo06g00036 Cmo-Chr6:241017 1.44E-30 dispersed
Cmo03g00263 Cmo-Chr3:3918355 Cmo07g01221 Cmo-Chr7:6647349 1.93E-140 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g00263 K09875 - csv:101220534 410.994